Miyakogusa Predicted Gene
- Lj2g3v0855300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0855300.1 Non Chatacterized Hit- tr|I1J4K0|I1J4K0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
GN=G,65.87,0,seg,NULL; RNA-DEPENDENT RNA POLYMERASE,RNA-dependent RNA
polymerase, eukaryotic-type; coiled-coil,NU,CUFF.35566.1
(2928 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69166 similar to UniRef100_UPI000034ED40 Cluster: RNA... 2024 0.0
gnl|LJGI|TC78872 weakly similar to UniRef100_A7PEI0 Cluster: Chr... 615 e-175
gnl|LJGI|BP066347 similar to UniRef100_UPI000034ED40 Cluster: RN... 531 e-150
gnl|LJGI|TC82299 similar to UniRef100_Q5QMN4 Cluster: RNA-depend... 420 e-116
gnl|LJGI|TC79718 weakly similar to UniRef100_A7PEI0 Cluster: Chr... 420 e-116
gnl|LJGI|BP063282 weakly similar to UniRef100_Q5QMN4 Cluster: RN... 365 1e-99
>gnl|LJGI|TC69166 similar to UniRef100_UPI000034ED40 Cluster: RNA-dependent RNA
polymerase family protein; n=1; Arabidopsis thaliana|Rep:
RNA-dependent RNA polymerase family protein - Arabidopsis
thaliana, partial (15%)
Length = 1217
Score = 2024 bits (1021), Expect = 0.0
Identities = 1065/1084 (98%), Gaps = 11/1084 (1%)
Strand = Plus / Plus
Query: 1845 tggggatgtgctcgtttatcgaaatccagggttacattttggggacattcacataatgca 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggggatgtgctcgtttatcgaaatccagggttacattttggggacattcacataatgca 60
Query: 1905 tgccagatatgtggaggaattagaatcttatgttggccatagcaaatatgcaannnnnnn 1964
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgccagatatgtggaggaattagaatcttatgttggccatagcaaatatgcaattttttt 120
Query: 1965 cccatgtgttggacctcgctcgatagcagatgagatagctgggggtgattttgatggtga 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cccatgtgttggacctcgctcgatagcagatgagatagctgggggtgattttgatggtga 180
Query: 2025 cttgtactgggtttcaaaacatcctcagctgttgcaacatttcagaaagagtgatccttg 2084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttgtactgggtttcaaaacatcctcagctgttgcaacatttcagaaagagtgatccttg 240
Query: 2085 gatagaaagtcctgcgccttgcaactctatccgattggattctactattaaaaagcctag 2144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatagaaagtcctgcgccttgcaactctatccgattggattctactattaaaaagcctag 300
Query: 2145 tggactttcagctgaggaacttgaggaagaacttttcagactattcctggaaactcggtt 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggactttcagctgaggaacttgaggaagaacttttcagactattcctggaaactcggtt 360
Query: 2205 ccaaccaagtaacactataggtgcggcagctgatagctggatggcactaatggatcgtct 2264
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccaaccaag-----------gtgcggcagctgatagctggatggcactaatggatcgtct 409
Query: 2265 tttaacattaagagatgactgcactaaagaaaatgagaagcaacatgtgaaggaaaatat 2324
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 410 tttaacattaagagatgactgcactaaaaaaaatgagaagcaacatgtgaaggaaaatat 469
Query: 2325 acttaaattgattgatatatactaccaggcaatagatgctcctaagcaaggtggaggaaa 2384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acttaaattgattgatatatactaccaggcaatagatgctcctaagcaaggtggaggaaa 529
Query: 2385 gctccgaattccaaatgatctgactgttgaaatgtacccccactatatggaaaggggcag 2444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gctccgaattccaaatgatctgactgttgaaatgtacccccactatatggaaaggggcag 589
Query: 2445 atcattcacgtcaacctctatcttaggtttaatatatgatgaggttggcagatggcaaac 2504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atcattcacgtcaacctctatcttaggtttaatatatgatgaggttggcagatggcaaac 649
Query: 2505 caacgatgacatgcctgggaaagacattagaaaactcccatgttttgatgctgaaatacc 2564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 caacgatgacatgcctgggaaagacattagaaaactcccatgttttgatgctgaaatacc 709
Query: 2565 tatggactgtatgcaaaagtgggaagaactatatagaaattatagagaggatatgactaa 2624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tatggactgtatgcaaaagtgggaagaactatatagaaattatagagaggatatgactaa 769
Query: 2625 tgccttaaaggaccctcttaaggccaatgatgaagcggatgaagtcattaagatgtataa 2684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tgccttaaaggaccctcttaaggccaatgatgaagcggatgaagtcattaagatgtataa 829
Query: 2685 gcagaaattgtatggtgctgctacgatggaggatagtccgaagaatattagtgatattta 2744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gcagaaattgtatggtgctgctacgatggaggatagtccgaagaatattagtgatattta 889
Query: 2745 taaagaggctttggctgtgtaccatgttacttacaactttgccattctatgtaagtcagt 2804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 taaagaggctttggctgtgtaccatgttacttacaactttgccattctatgtaagtcagt 949
Query: 2805 tggcaaatgtggctttgcatggaaggtagctggttcagctctcatgagtctttataccat 2864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 tggcaaatgtggctttgcatggaaggtagctggttcagctctcatgagtctttataccat 1009
Query: 2865 aaaacaaaatcaaaggactttgacctgtgctccatctgtattgcgtgagatttttggttc 2924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 aaaacaaaatcaaaggactttgacctgtgctccatctgtattgcgtgagatttttggttc 1069
Query: 2925 atga 2928
||||
Sbjct: 1070 atga 1073
>gnl|LJGI|TC78872 weakly similar to UniRef100_A7PEI0 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (14%)
Length = 626
Score = 615 bits (310), Expect = e-175
Identities = 338/352 (96%)
Strand = Plus / Plus
Query: 1701 aaaacttgcaatagaggnnnnnnngaggcttagaggagggaggctttatttacctgattg 1760
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaacttgcaatagaggaaaaaaagaggcttagaggagggaggctttatttacctgattg 60
Query: 1761 tttctatttaatggggactgtagaccccactgggcgtctgaaagcgaatgaagtttgtat 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttctatttaatggggactgtagaccccactgggcgtctgaaagcgaatgaagtttgtat 120
Query: 1821 aatccatgaaaatggccagattactggggatgtgctcgtttatcgaaatccagggttaca 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatccatgaaaatggccagattactggggatgtgctcgtttatcgaaatccagggttaca 180
Query: 1881 ttttggggacattcacataatgcatgccagatatgtggaggaattagaatcttatgttgg 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttggggacattcacataatgcatgccagatatgtggaggaattagaatcttatgttgg 240
Query: 1941 ccatagcaaatatgcaannnnnnncccatgtgttggacctcgctcgatagcagatgagat 2000
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccatagcaaatatgcaatttttttcccatgtgttggacctcgctcgatagcagatgagat 300
Query: 2001 agctgggggtgattttgatggtgacttgtactgggtttcaaaacatcctcag 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agctgggggtgattttgatggtgacttgtactgggtttcaaaacatcctcag 352
>gnl|LJGI|BP066347 similar to UniRef100_UPI000034ED40 Cluster: RNA-dependent RNA
polymerase family protein; n=1; Arabidopsis
thaliana|Rep: RNA-dependent RNA polymerase family
protein - Arabidopsis thaliana, partial (4%)
Length = 553
Score = 531 bits (268), Expect = e-150
Identities = 270/271 (99%)
Strand = Plus / Plus
Query: 282 gacggcgatgatgacgacgatgaacgacgctctctccgccttgggagaattggagttcag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gacggcgatgatgacgacgatgaacgacgctctctccgccttgggagaattggagttcag 342
Query: 342 aaaggccttcctgctactgagttatatcggacgggagagccttgaaaatgttgtcaccgg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaaggccttcctgctactgagttatatcggacgggagagccttgaaaatgttgtcaccgg 402
Query: 402 tgactatatcagaagcctcaaggacttaccaatgggaaggtttgaagaagtaatatgggg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgactatatcagaagcctcaaggacttaccaatgggaaggtttgaagaagtaatatgggg 462
Query: 462 agacattggaagtaaccacctcctcgaccgtcaagatcgccaattgtatcttgactggga 521
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 463 agacattggaagtaaccacctcctcgaccgtcaagatcgccaatngtatcttgactggga 522
Query: 522 ttctggccggccgcatgtatatcagtgcttt 552
|||||||||||||||||||||||||||||||
Sbjct: 523 ttctggccggccgcatgtatatcagtgcttt 553
Score = 381 bits (192), Expect = e-104
Identities = 211/215 (98%), Gaps = 3/215 (1%)
Strand = Plus / Plus
Query: 1 atggcggagcaacctgttcttcttccggcgtcggtggagaacatgatcaacgagatctgc 60
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5 atggcggagca-cctgttcttcttccgg--tcggtggagaacatgatcaacgagatctgc 61
Query: 61 gagaagcagaggcaatcgccaccggactccgccgtgagacgtggacttgccgccatcgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gagaagcagaggcaatcgccaccggactccgccgtgagacgtggacttgccgccatcgga 121
Query: 121 gaggaaggagcacttcaactcctcctcaccatctccaaatccaaaattaaacacacattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gaggaaggagcacttcaactcctcctcaccatctccaaatccaaaattaaacacacattc 181
Query: 181 tccagtttcatcgtgcacatgctcaaaaaccacaa 215
||| |||||||||||||||||||||||||||||||
Sbjct: 182 tccggtttcatcgtgcacatgctcaaaaaccacaa 216
>gnl|LJGI|TC82299 similar to UniRef100_Q5QMN4 Cluster: RNA-dependent RNA
polymerase-like; n=1; Oryza sativa Japonica Group|Rep:
RNA-dependent RNA polymerase-like - Oryza sativa subsp.
japonica (Rice), partial (3%)
Length = 483
Score = 420 bits (212), Expect = e-116
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 2477 tatatgatgaggttggcagatggcaaaccaacgatgacatgcctgggaaagacattagaa 2536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatatgatgaggttggcagatggcaaaccaacgatgacatgcctgggaaagacattagaa 60
Query: 2537 aactcccatgttttgatgctgaaatacctatggactgtatgcaaaagtgggaagaactat 2596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactcccatgttttgatgctgaaatacctatggactgtatgcaaaagtgggaagaactat 120
Query: 2597 atagaaattatagagaggatatgactaatgccttaaaggaccctcttaaggccaatgatg 2656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atagaaattatagagaggatatgactaatgccttaaaggaccctcttaaggccaatgatg 180
Query: 2657 aagcggatgaagtcattaagatgtataagcag 2688
||||||||||||||||||||||||||||||||
Sbjct: 181 aagcggatgaagtcattaagatgtataagcag 212
Score = 254 bits (128), Expect = 3e-66
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 2801 cagttggcaaatgtggctttgcatggaaggtagctggttcagctctcatgagtctttata 2860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cagttggcaaatgtggctttgcatggaaggtagctggttcagctctcatgagtctttata 269
Query: 2861 ccataaaacaaaatcaaaggactttgacctgtgctccatctgtattgcgtgagatttttg 2920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccataaaacaaaatcaaaggactttgacctgtgctccatctgtattgcgtgagatttttg 329
Query: 2921 gttcatga 2928
||||||||
Sbjct: 330 gttcatga 337
>gnl|LJGI|TC79718 weakly similar to UniRef100_A7PEI0 Cluster: Chromosome chr11
scaffold_13, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 725
Score = 420 bits (212), Expect = e-116
Identities = 232/239 (97%)
Strand = Plus / Plus
Query: 2690 aattgtatggtgctgctacgatggaggatagtccgaagaatattagtgatatttataaag 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattgtatggtgctgctacgatggaggatagtccgaagaatattagtgatatttataaag 60
Query: 2750 aggctttggctgtgtaccatgttacttacaactttgccattctatgtaagtcagttggca 2809
||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |
Sbjct: 61 aggctttggctgtgtaccatgttacttaccactttgcccttctatgtaagtccgttgncc 120
Query: 2810 aatgtggctttgcatggaaggtagctggttcagctctcatgagtctttataccataaaac 2869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatgtggctttgcatggaaggtagctggttcagctctcatgagtctttataccataaaac 180
Query: 2870 aaaatcaaaggactttgacctgtgctccatctgtattgcgtgagatttttggttcatga 2928
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caaatccaaggactttgacctgtgctccatctgtattgcgtgagatttttggttcatga 239
>gnl|LJGI|BP063282 weakly similar to UniRef100_Q5QMN4 Cluster: RNA-dependent RNA
polymerase-like; n=1; Oryza sativa Japonica Group|Rep:
RNA-dependent RNA polymerase-like - Oryza sativa subsp.
japonica (Rice), partial (4%)
Length = 519
Score = 365 bits (184), Expect = 1e-99
Identities = 188/190 (98%)
Strand = Plus / Minus
Query: 2739 tatttataaagaggctttggctgtgtaccatgttacttacaactttgccattctatgtaa 2798
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 519 tatttataaagaggctttggctgtgtaccatgttacttacaactttnccattctatgtaa 460
Query: 2799 gtcagttggcaaatgtggctttgcatggaaggtagctggttcagctctcatgagtcttta 2858
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gtcagttgncaaatgtggctttgcatggaaggtagctggttcagctctcatgagtcttta 400
Query: 2859 taccataaaacaaaatcaaaggactttgacctgtgctccatctgtattgcgtgagatttt 2918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 taccataaaacaaaatcaaaggactttgacctgtgctccatctgtattgcgtgagatttt 340
Query: 2919 tggttcatga 2928
||||||||||
Sbjct: 339 tggttcatga 330