Miyakogusa Predicted Gene
- Lj2g3v0741700.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0741700.1 Non Chatacterized Hit- tr|G1TQW9|G1TQW9_RABIT
Uncharacterized protein (Fragment) OS=Oryctolagus
cuni,29.09,1e-18,seg,NULL; coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL;
SYNTAXIN-18,NULL; Syntaxin-18_N,SNARE-complex ,CUFF.35329.1
(933 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67968 similar to UniRef100_A7PID6 Cluster: Chromosome... 1802 0.0
gnl|LJGI|GO023125 similar to UniRef100_A7PID6 Cluster: Chromosom... 862 0.0
gnl|LJGI|TC75419 similar to UniRef100_A7PID6 Cluster: Chromosome... 646 0.0
gnl|LJGI|TC66895 similar to UniRef100_A7PID6 Cluster: Chromosome... 494 e-139
gnl|LJGI|BP061993 homologue to UniRef100_A7PID6 Cluster: Chromos... 248 5e-65
>gnl|LJGI|TC67968 similar to UniRef100_A7PID6 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 1204
Score = 1802 bits (909), Expect = 0.0
Identities = 927/933 (99%)
Strand = Plus / Plus
Query: 1 atggcgaaagcgagagatagaaccgaagatttcaaagatgcagtgcgccacagtgctcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 atggcgaaagcgagagatagaaccgaagatttcaaagatgcagtgcgccacagtgctcgc 163
Query: 61 tctctcggctacgatgaggctaagttggcttcaattttggcatctttcattattcataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tctctcggctacgatgaggctaagttggcttcaattttggcatctttcattattcataaa 223
Query: 121 cctccgcaaaggtctccattttacaaagctgcattaaagacgcttgagagtattggagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 cctccgcaaaggtctccattttacaaagctgcattaaagacgcttgagagtattggagaa 283
Query: 181 ttggaacagtttttgttgaagcatagaaaggactatacagatcttcaccgcacaactgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttggaacagtttttgttgaagcatagaaaggactatacagatcttcaccgcacaactgaa 343
Query: 241 caagagagagatagcattgagcaagaagtcagtgcttttattaaaacatgccaagaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caagagagagatagcattgagcaagaagtcagtgcttttattaaaacatgccaagaacaa 403
Query: 301 atcgatgttctcaagaatagtataaataatgaagaggaaacttcaaaaggttggcttggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atcgatgttctcaagaatagtataaataatgaagaggaaacttcaaaaggttggcttggc 463
Query: 361 attgcgactgcaaaggctaatgccgacaccattgcccacaaacatggagtggttctaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 attgcgactgcaaaggctaatgccgacaccattgcccacaaacatggagtggttctaatt 523
Query: 421 ttaagtgagagactccatccagttacagcacagtttgatcagcccagagctgtacgcttc 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 524 ttaagtgagagactccatccagttacagcacagtttgatcagctcagagctgtacgcttc 583
Query: 481 cagtatgctactaatcgatcgacaccacgaagaaaacttaatcgtgtgacccggaaaaat 540
||| |||||| |||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 584 caggatgctattaatagagcaacaccacgaagaaaacttaatcgtgtgacccggaaaaat 643
Query: 541 actactgaaacctctgaatcaggtgatatggagctcagagaacctgatgagttacgcagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 actactgaaacctctgaatcaggtgatatggagctcagagaacctgatgagttacgcagt 703
Query: 601 gagcctttaagagtccaacaacaactcttggatgatgaaacacgagcccttcaggttgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gagcctttaagagtccaacaacaactcttggatgatgaaacacgagcccttcaggttgaa 763
Query: 661 ttgactaatcttctagacacagtccaagaaactgaaacgaagatggtggaaatgtctgca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttgactaatcttctagacacagtccaagaaactgaaacgaagatggtggaaatgtctgca 823
Query: 721 ttaaatcacctcatgtctacacatgttttgcagcaggctcatcaaattgagcatctgtat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ttaaatcacctcatgtctacacatgttttgcagcaggctcatcaaattgagcatctgtat 883
Query: 781 gagcaggctgttgaagctactaagaatgttgagcttggaaacaaagaactatcacaagcc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gagcaggctgttgaagctactaagaatgttgagcttggaaacaaagaactatcacaagcc 943
Query: 841 attcagcgtaataccagcagcaggacatttcttttactctttctatttgtgcttactttt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 attcagcgtaataccagcagcaggacatttcttttactctttctatttgtgcttactttt 1003
Query: 901 tcgatcctctttcttgattggtatagttaagta 933
|||||||||||||||||||||||||||||||||
Sbjct: 1004 tcgatcctctttcttgattggtatagttaagta 1036
>gnl|LJGI|GO023125 similar to UniRef100_A7PID6 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (52%)
Length = 590
Score = 862 bits (435), Expect = 0.0
Identities = 471/483 (97%)
Strand = Plus / Plus
Query: 1 atggcgaaagcgagagatagaaccgaagatttcaaagatgcagtgcgccacagtgctcgc 60
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 106 atggcaaaagcgagagacagaaccgaagatttcaaagatgcagtgcgccagagtgctcgc 165
Query: 61 tctctcggctacgatgaggctaagttggcttcaattttggcatctttcattattcataaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 166 tctctcggctacgatgaggctaagttggcttcaattttggcatctttcatcattcataaa 225
Query: 121 cctccgcaaaggtctccattttacaaagctgcattaaagacgcttgagagtattggagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cctccgcaaaggtctccattttacaaagctgcattaaagacgcttgagagtattggagaa 285
Query: 181 ttggaacagtttttgttgaagcatagaaaggactatacagatcttcaccgcacaactgaa 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttggaacagtttctgttgaagcatagaaaggactatacagatcttcaccgcacaactgaa 345
Query: 241 caagagagagatagcattgagcaagaagtcagtgcttttattaaaacatgccaagaacaa 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 346 caagagagagatagcattgagcaagaagttagtgcttttattaaaacatgccaagaacaa 405
Query: 301 atcgatgttctcaagaatagtataaataatgaagaggaaacttcaaaaggttggcttggc 360
||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 406 atcgatgttcttaagaatagtataaataatgtagaggaaaattcaaaaggttggcttggt 465
Query: 361 attgcgactgcaaaggctaatgccgacaccattgcccacaaacatggagtggttctaatt 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attgcgaccgcaaaggctaatgccgacaccattgcccacaaacatggagtggttctaatt 525
Query: 421 ttaagtgagagactccatccagttacagcacagtttgatcagcccagagctgtacgcttc 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 526 ttaagtgagagactccatccagttacagcacagtttgatcagctcagagctgtacgcttc 585
Query: 481 cag 483
|||
Sbjct: 586 cag 588
>gnl|LJGI|TC75419 similar to UniRef100_A7PID6 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (39%)
Length = 563
Score = 646 bits (326), Expect = 0.0
Identities = 365/378 (96%)
Strand = Plus / Plus
Query: 555 tgaatcaggtgatatggagctcagagaacctgatgagttacgcagtgagcctttaagagt 614
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgaatcaggtgatatggagctcagagaacctgatgagttacgcagcgagcctttaagagt 60
Query: 615 ccaacaacaactcttggatgatgaaacacgagcccttcaggttgaattgactaatcttct 674
||| || ||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 61 ccagcagcaactcttggatgatgaaacacgtgtccttcaggttgaattgactaatcttct 120
Query: 675 agacacagtccaagaaactgaaacgaagatggtggaaatgtctgcattaaatcacctcat 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agacacagtccaagaaactgaaacgaagatggtggaaatgtctgcattaaatcacctcat 180
Query: 735 gtctacacatgttttgcagcaggctcatcaaattgagcatctgtatgagcaggctgttga 794
||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 gtctacacatgttctgcagcaagctcatcaaattgagtatctgtatgagcaggctgttga 240
Query: 795 agctactaagaatgttgagcttggaaacaaagaactatcacaagccattcagcgtaatac 854
||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 241 agctactaagaatgtagagtttggtaacaaagaactatcacaagccattcagcgtaatag 300
Query: 855 cagcagcaggacatttcttttactctttctatttgtgcttactttttcgatcctctttct 914
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 301 cagcagcaggacatttcttttactctttctatttgtgcttactttttcgatcatctttct 360
Query: 915 tgattggtatagttaagt 932
||||||||||||||||||
Sbjct: 361 tgattggtatagttaagt 378
>gnl|LJGI|TC66895 similar to UniRef100_A7PID6 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (29%)
Length = 580
Score = 494 bits (249), Expect = e-139
Identities = 264/269 (98%)
Strand = Plus / Plus
Query: 1 atggcgaaagcgagagatagaaccgaagatttcaaagatgcagtgcgccacagtgctcgc 60
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 75 atggcaaaagcgagagacagaaccgaagatttcaaagatgcagtgcgccagagtgctcgc 134
Query: 61 tctctcggctacgatgaggctaagttggcttcaattttggcatctttcattattcataaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 tctctcggctacgatgaggctaagttggcttcaattttggcatctttcatcattcataaa 194
Query: 121 cctccgcaaaggtctccattttacaaagctgcattaaagacgcttgagagtattggagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cctccgcaaaggtctccattttacaaagctgcattaaagacgcttgagagtattggagaa 254
Query: 181 ttggaacagtttttgttgaagcatagaaaggactatacagatcttcaccgcacaactgaa 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttggaacagtttctgttgaagcatagaaaggactatacagatcttcaccgcacaactgaa 314
Query: 241 caagagagagatagcattgagcaagaagt 269
|||||||||||||||||||||||||||||
Sbjct: 315 caagagagagatagcattgagcaagaagt 343
>gnl|LJGI|BP061993 homologue to UniRef100_A7PID6 Cluster: Chromosome chr13
scaffold_17, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_17, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (24%)
Length = 350
Score = 248 bits (125), Expect = 5e-65
Identities = 143/149 (95%)
Strand = Plus / Minus
Query: 784 caggctgttgaagctactaagaatgttgagcttggaaacaaagaactatcacaagccatt 843
|||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||
Sbjct: 263 caggctgttgaagctactaagaatgtagagtttggtaaccaagaactatcacaagccatt 204
Query: 844 cagcgtaataccagcagcaggacatttcttttactctttctatttgtgcttactttttcg 903
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cagcgtaatagcagcagcaggacatttcttttactctttctatttgtgcttactttttcg 144
Query: 904 atcctctttcttgattggtatagttaagt 932
||| |||||||||||||||||||||||||
Sbjct: 143 atcatctttcttgattggtatagttaagt 115
Score = 141 bits (71), Expect = 9e-33
Identities = 86/91 (94%)
Strand = Plus / Minus
Query: 565 gatatggagctcagagaacctgatgagttacgcagtgagcctttaagagtccaacaacaa 624
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct: 350 gatatggagctcagagaacctgatgagttacgcagcgagcctttaagagtccagcagcaa 291
Query: 625 ctcttggatgatgaaacacgagcccttcagg 655
|||||||||||||||||||| | ||||||||
Sbjct: 290 ctcttggatgatgaaacacgtgtccttcagg 260