Miyakogusa Predicted Gene
- Lj2g3v0637020.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0637020.1 tr|G7IND7|G7IND7_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_2g0,28.38,1e-18,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; seg,NULL; FAMILY NOT NAMED,NULL;
PPR,,CUFF.35179.1
(954 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63425 similar to UniRef100_A7QHY8 Cluster: Chromosome... 1243 0.0
gnl|LJGI|TC73173 similar to UniRef100_A7QHY8 Cluster: Chromosome... 1203 0.0
gnl|LJGI|TC72795 weakly similar to UniRef100_Q9FME4 Cluster: Gb|... 307 7e-83
>gnl|LJGI|TC63425 similar to UniRef100_A7QHY8 Cluster: Chromosome chr17 scaffold_101,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_101, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (43%)
Length = 711
Score = 1243 bits (627), Expect = 0.0
Identities = 630/631 (99%)
Strand = Plus / Plus
Query: 324 ggtgctggttgagatggactatcgtggggttcccaggaatgtggagacattcaatgtttt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggtgctggttgagatggactatcgtggggttcccaggaatgtggagacattcaatgtttt 63
Query: 384 gataacgaatttgtgtaagattaggaagaccgaggatgcgttgaaattgttccataggat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gataacgaatttgtgtaagattaggaagaccgaggatgcgttgaaattgttccataggat 123
Query: 444 gggagagtggggatgctatcccaatgagactacatttgttgttttgatcaggagcttgta 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gggagagtggggatgctatcccaatgagactacatttgttgttttgatcaggagcttgta 183
Query: 504 tcaggctgcaaggttggaagaaggggatgaaatgattgataggatgaaatctgctgggtt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcaggctgcaaggttggaagaaggggatgaaatgattgataggatgaaatctgctgggtt 243
Query: 564 tggtgcttctcttgataagaaggcttactatcagtttctcacaattttgtgtgggattga 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tggtgcttctcttgataagaaggcttactatcagtttctcacaattttgtgtgggattga 303
Query: 624 gagggttgagcatgctttgaaggtctttgccatgatgaaagctgatgggtgtgaacctgg 683
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 304 gagggttgagcatgctttgaaggtcttagccatgatgaaagctgatgggtgtgaacctgg 363
Query: 684 gattaagacttatgatttgttgatgtccaaattgggtgctcacaatcgcgttgataaggc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gattaagacttatgatttgttgatgtccaaattgggtgctcacaatcgcgttgataaggc 423
Query: 744 taatgctcttttccatgaagcccagagtagaggattggctgtgacgcccaaggagtacgc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taatgctcttttccatgaagcccagagtagaggattggctgtgacgcccaaggagtacgc 483
Query: 804 tgttgacccaagatacaagaagaagaagaaggtcaaggctgtgaagaagagggaaacctt 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgttgacccaagatacaagaagaagaagaaggtcaaggctgtgaagaagagggaaacctt 543
Query: 864 gcctgagaaaatggctagaaagagaagacgcctgaaaaagattcggctgagttatgttaa 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcctgagaaaatggctagaaagagaagacgcctgaaaaagattcggctgagttatgttaa 603
Query: 924 gaagccaaaacgaatgaggggtcgagtctag 954
|||||||||||||||||||||||||||||||
Sbjct: 604 gaagccaaaacgaatgaggggtcgagtctag 634
>gnl|LJGI|TC73173 similar to UniRef100_A7QHY8 Cluster: Chromosome chr17 scaffold_101,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_101, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (44%)
Length = 680
Score = 1203 bits (607), Expect = 0.0
Identities = 619/623 (99%)
Strand = Plus / Plus
Query: 189 agctcggaggctcgctggggagatgtatcgtggagggtttgagcttggtgtagtggctta 248
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 53 agctcggaggcttgctggggagatgtatcgtggacggtttgagcttggtgtagtggctta 112
Query: 249 caacgcgatgctagattgtgtgtgtgagctttgtcgccagaaggatccgtttctgcttca 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 caacgcgatgctagattgtgtgtgtgagctttgtcgccagaaggatccgtttctgcttca 172
Query: 309 ttcggaggcggagaaggtgctggttgagatggactatcgtggggttcccaggaatgtgga 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ttcggaggcggagaaggtgctggttgagatggactatcgtggggttcccaggaatgtgga 232
Query: 369 gacattcaatgttttgataacgaatttgtgtaagattaggaagaccgaggatgcgttgaa 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gacattcaatgttttgataacgaatttgtgtaagattaggaagaccgaggatgcgttgaa 292
Query: 429 attgttccataggatgggagagtggggatgctatcccaatgagactacatttgttgtttt 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 attgttccataggatgggagagtggggatgctatcccaatgagactacatttgttgtttt 352
Query: 489 gatcaggagcttgtatcaggctgcaaggttggaagaaggggatgaaatgattgataggat 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gatcaggagcttgtatcaggctgcaaggttggaagaaggggatgaaatgattgataggat 412
Query: 549 gaaatctgctgggtttggtgcttctcttgataagaaggcttactatcagtttctcacaat 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaaatctgctgggtttggtgcttctcttgataagaaggcttactatcagtttctcacaat 472
Query: 609 tttgtgtgggattgagagggttgagcatgctttgaaggtctttgccatgatgaaagctga 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tttgtgtgggattgagagggttgagcatgctttgaaggtctttgccatgatgaaagctga 532
Query: 669 tgggtgtgaacctgggattaagacttatgatttgttgatgtccaaattgggtgctcacaa 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgggtgtgaacctgggattaagacttatgatttgttgatgtccaaattgggtgctcacaa 592
Query: 729 tcgcgttgataaggctaatgctcttttccatgaagcccagagtagaggattggctgtgac 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tcgcgttgataaggctaatgctcttttccatgaagcccagagtagaggattggctgtgac 652
Query: 789 gcccaaggagtacgctgttgacc 811
||||||||||| ||||||||||
Sbjct: 653 tcccaaggagtatgctgttgacc 675
>gnl|LJGI|TC72795 weakly similar to UniRef100_Q9FME4 Cluster: Gb|AAF26800.1; n=1;
Arabidopsis thaliana|Rep: Gb|AAF26800.1 - Arabidopsis
thaliana (Mouse-ear cress), partial (32%)
Length = 829
Score = 307 bits (155), Expect = 7e-83
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 1 atggagcgggattacggcttgaagcgtgatcgcggttcactgaaggtggttgtggagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atggagcgggattacggcttgaagcgtgatcgcggttcactgaaggtggttgtggagaag 734
Query: 61 ctgtgttccaagggtttcgccagctatgcggagaggatggtgaaggatttggctagggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctgtgttccaagggtttcgccagctatgcggagaggatggtgaaggatttggctagggtg 794
Query: 121 atcttcccggatgaagccatgtgtgatatgctgat 155
|||||||||||||||||||||||||||||||||||
Sbjct: 795 atcttcccggatgaagccatgtgtgatatgctgat 829