Miyakogusa Predicted Gene

Lj2g3v0636230.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0636230.3 tr|Q7X8E8|Q7X8E8_RAPSA Pentatricopeptide
repeat-containing protein OS=Raphanus sativus GN=Ppr.27
PE=,28.07,3e-18,PPR: pentatricopeptide repeat domain,Pentatricopeptide
repeat; TPR-like,NULL; PPR,Pentatricopeptide ,CUFF.35103.3
         (1952 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC594578 weakly similar to UniRef100_Q2HVJ3 Cluster: Te...   581   e-165

>gnl|LJGI|DC594578 weakly similar to UniRef100_Q2HVJ3 Cluster: Tetratricopeptide-like
           helical; n=1; Medicago truncatula|Rep:
           Tetratricopeptide-like helical - Medicago truncatula
           (Barrel medic), partial (7%)
          Length = 493

 Score =  581 bits (293), Expect = e-165
 Identities = 305/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 142 cccgccgccgcagtttcctcattccaccgcatgctcaactcgcaccctcccccacgcatc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cccgccgccgcagtttcctcattccaccgcatgctcaactcgcaccctcccccacgcatc 244

                                                                       
Query: 202 ctcgagttcaacaagctcctaaccaccctcgtcaaatcaaagcattaccccaccgccatc 261
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 245 ctcgagttcaacaagctcctaaccaagctcgtcaaatcaaagcattaccccaccgccatc 304

                                                                       
Query: 262 tcactctgttccaaaatggagctcagaggaatcaccccttgtgtcatcaccctcaccatc 321
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 305 tcactctgttccaaaatggagctcacaggaatcaccccttgtgtcatcaccctcaccatc 364

                                                                       
Query: 322 ttgatcacgtgcttctgtcacgtgggtcgcgtggccctcgcgttctccgtgctcgggaag 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttgatcacgtgcttctgtcacgtgggtcgcgtggccctcgcgttctccgtgctcgggaag 424

                                                                       
Query: 382 attctcaaacgggggtattatccatttgatgctgtgaccttgaacgcgctcatccaaggg 441
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 425 attctcaaacgggggtattatccatttgatgctgtgaccttgaacgcgctcatcaaaggg 484

                    
Query: 442 atttgtgtg 450
           |||||||||
Sbjct: 485 atttgtgtg 493



 Score =  145 bits (73), Expect = 1e-33
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttgccgtcgttcggagcagcgcgtcaccgaaacatgaacaccatactccgccatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  atgttgccgtcgttcggagcagcgcgtcaccgaaacatgaacaccatactccgccatagt 103

                        
Query: 61  caaacccgttgca 73
           |||||||||||||
Sbjct: 104 caaacccgttgca 116