Miyakogusa Predicted Gene

Lj2g3v0636000.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0636000.2 Non Chatacterized Hit- tr|C0PLS9|C0PLS9_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,45.65,9,seg,NULL;
PROKAR_LIPOPROTEIN,NULL,CUFF.35076.2
         (338 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV778604 similar to UniRef100_A7QW72 Cluster: Chromosom...   287   2e-77
gnl|LJGI|TC66392 similar to UniRef100_A7QW72 Cluster: Chromosome...   139   1e-32
gnl|LJGI|TC71463 similar to UniRef100_A7QIY8 Cluster: Chromosome...    72   2e-12

>gnl|LJGI|AV778604 similar to UniRef100_A7QW72 Cluster: Chromosome chr3 scaffold_199,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr3 scaffold_199, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (11%)
          Length = 545

 Score =  287 bits (145), Expect = 2e-77
 Identities = 154/157 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctaaggcggtcgagggcggggatctcatcgtcgatcttgtcctcgacggcttgcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atgctaaggcggtcgagggcggggatctcatcgtcgatcttgtcctcgacggcttgcacc 448

                                                                       
Query: 61  accgtgaggacttgcttctcgatctcgggacgcttactggtacttgcttcaccaccccac 120
           | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 449 agcgtgaggacttgcttctcgatctcgggacgcttactggtacttgcttcaccaacccag 508

                                                
Query: 121 acgctggttataactgtcacctgcaacccagatcgac 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 509 acgctggttataactgtcacctgcaacccagatcgac 545


>gnl|LJGI|TC66392 similar to UniRef100_A7QW72 Cluster: Chromosome chr3 scaffold_199,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr3 scaffold_199, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (75%)
          Length = 966

 Score =  139 bits (70), Expect = 1e-32
 Identities = 76/78 (97%)
 Strand = Plus / Minus

                                                                       
Query: 7   aggcggtcgagggcggggatctcatcgtcgatcttgtcctcgacggcttgcaccaccgtg 66
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 148 aggcggtcgagggcggagatctcatcgtcgatcttgtcctcgacggcttgaaccaccgtg 89

                             
Query: 67  aggacttgcttctcgatc 84
           ||||||||||||||||||
Sbjct: 88  aggacttgcttctcgatc 71


>gnl|LJGI|TC71463 similar to UniRef100_A7QIY8 Cluster: Chromosome chr2 scaffold_105,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_105, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (94%)
          Length = 1566

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 232 ccgatggcttggacggtggatccagatttggtgacgttttccca 275
           ||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 697 ccgatggcttggacggtggatccagatttggtgacattctccca 654