Miyakogusa Predicted Gene
- Lj2g3v0635810.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0635810.1 tr|D7KJP0|D7KJP0_ARALL Agenet domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALY,28.52,7e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Agenet,Agenet-like domain; Tudor-like domain
presen,NODE_19654_length_1145_cov_273.335358.path1.1
(840 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68691 homologue to UniRef100_Q0I6L2 Cluster: Ribonucl... 1657 0.0
gnl|LJGI|TC75155 similar to UniRef100_A4BMW8 Cluster: Permease Y... 105 4e-22
>gnl|LJGI|TC68691 homologue to UniRef100_Q0I6L2 Cluster: Ribonuclease H; n=1;
Synechococcus sp. CC9311|Rep: Ribonuclease H -
Synechococcus sp. (strain CC9311), partial (6%)
Length = 1415
Score = 1657 bits (836), Expect = 0.0
Identities = 839/840 (99%)
Strand = Plus / Plus
Query: 1 atggtggagtatacttactgcgagcaaggcaccaatccccgggtagaattcgtgagcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atggtggagtatacttactgcgagcaaggcaccaatccccgggtagaattcgtgagcatt 387
Query: 61 gacaatctccggccacgccctccgctgaagccccaccatgacttcaagtccggcgacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gacaatctccggccacgccctccgctgaagccccaccatgacttcaagtccggcgacaag 447
Query: 121 gtggacacctacaacgacaaaggcagctggttggagggtcacataaccagcacattaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtggacacctacaacgacaaaggcagctggttggagggtcacataaccagcacattaagc 507
Query: 181 gatggcagatccttcgtgtgttataatgaccccaatcaaaagttcttgtttcccaatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gatggcagatccttcgtgtgttataatgaccccaatcaaaagttcttgtttcccaatgag 567
Query: 241 aagctcagggcgcaccatgaatggatcgatgaccattgggggcctccaacacaacaacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aagctcagggcgcaccatgaatggatcgatgaccattgggggcctccaacacaacaacca 627
Query: 301 aagaaggcggaacaggagttgtttagaaagggcgactgggttgaggtttccagtgacgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aagaaggcggaacaggagttgtttagaaagggcgactgggttgaggtttccagtgacgtg 687
Query: 361 gacggttatctagaaacttggtttcttgctgaagttgttgaggtaagggtacaagggaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gacggttatctagaaacttggtttcttgctgaagttgttgaggtaagggtacaagggaag 747
Query: 421 ttcaagtaccttgttcggtacaagcatttactggacgataactctcccaagtatcttgaa 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 748 ttcaagtaccttgttcggtacaagcatttactggatgataactctcccaagtatcttgaa 807
Query: 481 gaggagattgatgcccaacatataaggcctcttgcgcccaatactagagatggtgatgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gaggagattgatgcccaacatataaggcctcttgcgcccaatactagagatggtgatgct 867
Query: 541 aaacttggactagtgggcaaagttgatacttggcatattggtgattgtgatgctaaatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 aaacttggactagtgggcaaagttgatacttggcatattggtgattgtgatgctaaatat 927
Query: 601 aaactaggtgatagagttgatgcttggtctctttcgggctggaggtatgctaagattatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 aaactaggtgatagagttgatgcttggtctctttcgggctggaggtatgctaagattatt 987
Query: 661 gaggttcagaacgataacatatataaagttttcttgaagggtgacgaacaagaaaaggat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 gaggttcagaacgataacatatataaagttttcttgaagggtgacgaacaagaaaaggat 1047
Query: 721 aactttgaccccatcacattgagacggcattatgactgggttgatcgcaaatgggaaata 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 aactttgaccccatcacattgagacggcattatgactgggttgatcgcaaatgggaaata 1107
Query: 781 gcttctcagggcagcagctgtagctctgatgaggagtacggatttgctcaaatttagaag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 gcttctcagggcagcagctgtagctctgatgaggagtacggatttgctcaaatttagaag 1167
>gnl|LJGI|TC75155 similar to UniRef100_A4BMW8 Cluster: Permease YjgP/YjgQ; n=1;
Nitrococcus mobilis Nb-231|Rep: Permease YjgP/YjgQ -
Nitrococcus mobilis Nb-231, partial (5%)
Length = 1291
Score = 105 bits (53), Expect = 4e-22
Identities = 161/197 (81%), Gaps = 10/197 (5%)
Strand = Plus / Plus
Query: 228 gtttcccaatgagaagctcagggcgcaccatgaatggatcgatgaccattgggggcctcc 287
||||||||| ||||| |||||| | |||| |||||||||||||| ||||||| ||| ||
Sbjct: 411 gtttcccaaagagaatctcaggacccaccgcgaatggatcgatgatcattgggagccacc 470
Query: 288 aacacaacaaccaaagaaggcggaacaggagttgtttagaaagggcgactgggttgaggt 347
|| ||||||| |||| |||||| |||| |||| ||||||| |||||||||
Sbjct: 471 aatccaacaacaaaag---------caggagctgttcagaataggcgacttggttgaggt 521
Query: 348 ttccagtgacg-tggacggttatctagaaacttggtttcttgctgaagttgttgaggtaa 406
||||||||| | |||| ||||||| || | ||||||||||||| |||||||||||| |||
Sbjct: 522 ttccagtgaaggtggagggttatcgaggagcttggtttcttgccgaagttgttgagctaa 581
Query: 407 gggtacaagggaagttc 423
||||||||| ||||||
Sbjct: 582 aggtacaaggaaagttc 598
Score = 103 bits (52), Expect = 2e-21
Identities = 97/112 (86%)
Strand = Plus / Plus
Query: 21 cgagcaaggcaccaatccccgggtagaattcgtgagcattgacaatctccggccacgccc 80
|||||||| |||||||||| | | ||| ||||||||||||||| |||||||||||||
Sbjct: 207 cgagcaagacaccaatcccaagacacaatccgtgagcattgacaaggtccggccacgccc 266
Query: 81 tccgctgaagccccaccatgacttcaagtccggcgacaaggtggacacctac 132
||||| | || ||||||||||||||||| |||||||||||||||| |||||
Sbjct: 267 tccgccggagacccaccatgacttcaagatcggcgacaaggtggacgcctac 318
Score = 69.9 bits (35), Expect = 2e-11
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 779 tagcttctcagggcagcagctgtagctctgatgaggagtacgga-tttgctcaaatttag 837
||||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||| |
Sbjct: 930 tagcttctcagggcagcagctatagctctgatgattagtaaggattttgctcaaatttgg 989
Query: 838 aag 840
|||
Sbjct: 990 aag 992
Score = 60.0 bits (30), Expect = 2e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 563 ttgatacttggcatattggtgattgtgatgctaaatataaactaggtgatagagttgatg 622
||||| ||||| | ||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 714 ttgatgcttggaaaattggtgatcctgatgctaaatataaactactggatagagttgatg 773
Query: 623 ct 624
||
Sbjct: 774 ct 775