Miyakogusa Predicted Gene

Lj2g3v0632420.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0632420.1 Non Chatacterized Hit- tr|I1MQM3|I1MQM3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,79.62,0,PPR,Pentatricopeptide repeat; PPR_2,Pentatricopeptide
repeat; PPR_3,Pentatricopeptide repeat; DYW_de,CUFF.34950.1
         (2250 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS354499 weakly similar to UniRef100_A7NVM6 Cluster: Ch...   170   2e-41

>gnl|LJGI|FS354499 weakly similar to UniRef100_A7NVM6 Cluster: Chromosome chr18
           scaffold_1, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (5%)
          Length = 656

 Score =  170 bits (86), Expect = 2e-41
 Identities = 123/134 (91%), Gaps = 1/134 (0%)
 Strand = Plus / Minus

                                                                       
Query: 679 aagttgtttcaaatgatgttatcagaagggtttttgcctgataggtctactgtttcttgt 738
           ||||||||||||||| |||||||||| |||||||||  |||| |||||||||||||| ||
Sbjct: 656 aagttgtttcaaatggtgttatcagaggggtttttgt-tgatgggtctactgtttctcgt 598

                                                                       
Query: 739 gttcttccttctatagggatcttggaggatgtggtgatgggtgcgcaggttcatggttat 798
           |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||  ||
Sbjct: 597 gttcctcctgctatagggaacttggaggatgtggtgatgggtgcgcaggttcatggaaat 538

                         
Query: 799 gtgatcaagcaagg 812
           ||||||||||||||
Sbjct: 537 gtgatcaagcaagg 524



 Score =  135 bits (68), Expect = 1e-30
 Identities = 86/92 (93%)
 Strand = Plus / Minus

                                                                        
Query: 1273 tgcggaagaatccagttatctcgacgttgttttgataaaatgtcagccccaaatttggtt 1332
            ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 506  tgcggaagaatccagctatctcgacattgttttggtaaaatgtcagccccaaatttggtt 447

                                            
Query: 1333 tcttggaatgcaattatgaaaggatatgcaat 1364
            ||||||| |||||||||||  |||||||||||
Sbjct: 446  tcttggattgcaattatgagtggatatgcaat 415



 Score = 58.0 bits (29), Expect = 3e-07
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                         
Query: 1524 tggcgtcgaagctaaaatggaacattatg 1552
            |||||||||||||||||||||||||||||
Sbjct: 339  tggcgtcgaagctaaaatggaacattatg 367