Miyakogusa Predicted Gene
- Lj2g3v0632400.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0632400.2 CUFF.34980.2
(2310 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP052112 similar to UniRef100_A9CRE4 Cluster: Cyclic nu... 759 0.0
gnl|LJGI|FS339677 weakly similar to UniRef100_Q9LD37 Cluster: Pr... 749 0.0
gnl|LJGI|TC78526 similar to UniRef100_A9CRE4 Cluster: Cyclic nuc... 428 e-119
gnl|LJGI|TC78200 similar to UniRef100_A9CRE4 Cluster: Cyclic nuc... 361 1e-98
gnl|LJGI|GO010489 similar to UniRef100_A7QJZ3 Cluster: Chromosom... 200 3e-50
gnl|LJGI|BP080087 homologue to UniRef100_A7QJZ5 Cluster: Chromos... 196 4e-49
>gnl|LJGI|BP052112 similar to UniRef100_A9CRE4 Cluster: Cyclic nucleotide gated channel;
n=1; Malus x domestica|Rep: Cyclic nucleotide gated
channel - Malus domestica (Apple) (Malus sylvestris),
partial (21%)
Length = 553
Score = 759 bits (383), Expect = 0.0
Identities = 394/398 (98%)
Strand = Plus / Minus
Query: 1881 aattttgagtcagggcagtttgatagagaagatggtatttgtggtgcgtggaaaattgga 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aattttgagtcagggcagtttgatagagaagatggtatttgtggtgcgtggaaaattgga 494
Query: 1941 gagcattggagaggatggaactagaatgccattatctgaaggggacgcttgtggtgaaga 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gagcattggagaggatggaactagaatgccattatctgaaggggacgcttgtggtgaaga 434
Query: 2001 acttatgacatggtatcttgaacattcttctgtaagctcagatggtagaaaagtaaggct 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acttatgacatggtatcttgaacattcttctgtaagctcagatggtagaaaagtaaggct 374
Query: 2061 tcctggacagaggttggttagcaacaggacagtaaagtgcttgacaaatgtggaggcatt 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcctggacagaggttggttagcaacaggacagtaaagtgcttgacaaatgtggaggcatt 314
Query: 2121 ttcactctctgccgccgaccttgaagaagtcacgatacttttcacaagattcttgcggag 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttcactctctgccgccgaccttgaagaagtcacgatacttttcacaagattcttgcggag 254
Query: 2181 ccctcaggtccaaggagctttaaggtatgaatcgccttattggagatcccttgccgcaaa 2240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 253 ccctcaggtccaaggagctttaaggtatgaatcgccttattggagatcccttgccgcnaa 194
Query: 2241 ccgcattcaagttgcatggagatacaggaagaaacgtc 2278
|||||||||||||||||||||||| || |||||||||
Sbjct: 193 ccgcattcaagttgcatggagatatagacagaaacgtc 156
>gnl|LJGI|FS339677 weakly similar to UniRef100_Q9LD37 Cluster: Probable cyclic
nucleotide-gated ion channel 20 chloroplast precursor;
n=1; Arabidopsis, partial (2%)
Length = 798
Score = 749 bits (378), Expect = 0.0
Identities = 378/378 (100%)
Strand = Plus / Plus
Query: 1 atggctaattttaaaaatgatgaggtgccgatgctggcagaaacaaaggcacgagcacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atggctaattttaaaaatgatgaggtgccgatgctggcagaaacaaaggcacgagcacgg 480
Query: 61 ccaggtgatggaccttttgattctaaattccaaaggcttgtgaccaggacacaaagtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccaggtgatggaccttttgattctaaattccaaaggcttgtgaccaggacacaaagtgca 540
Query: 121 tcgactatttctgtccctttgagctccatggaacaatatgagggagatactagtgttata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcgactatttctgtccctttgagctccatggaacaatatgagggagatactagtgttata 600
Query: 181 agacatactggtccacttcagagtaagaggaatgcacccttaatgcagatgagtggtcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agacatactggtccacttcagagtaagaggaatgcacccttaatgcagatgagtggtcca 660
Query: 241 ctaaaagctacccctggaactgcaaaccttttgcagcagcatattattggaataggaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctaaaagctacccctggaactgcaaaccttttgcagcagcatattattggaataggaaac 720
Query: 301 agagcagaggagagaaagacagaaaattttgctgctttccgcagcacgggtccaaattat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agagcagaggagagaaagacagaaaattttgctgctttccgcagcacgggtccaaattat 780
Query: 361 tgggataacaaccacgat 378
||||||||||||||||||
Sbjct: 781 tgggataacaaccacgat 798
>gnl|LJGI|TC78526 similar to UniRef100_A9CRE4 Cluster: Cyclic nucleotide gated channel;
n=1; Malus x domestica|Rep: Cyclic nucleotide gated
channel - Malus domestica (Apple) (Malus sylvestris),
partial (13%)
Length = 803
Score = 428 bits (216), Expect = e-119
Identities = 235/240 (97%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 2040 agatggtagaaaagtaaggcttcctggacagaggttggttagcaacaggacagtaaagtg 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agatggtagaaaagtaaggcttcctggacagaggttggttagcaacaggacagtaaagtg 61
Query: 2100 cttgacaaatgtggaggcattttcactctctgccgccgaccttgaagaagtcacgatact 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cttgacaaatgtggaggcattttcactctctgccgccgaccttgaagaagtcacgatact 121
Query: 2160 tttcacaaga-ttcttgcggagccctcaggtccaaggagctttaaggtatgaatcgcctt 2218
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttcacaagacttcttgcggagccctcaggtccaaggagctttaaggtatgaatcgcctt 181
Query: 2219 attggagatcccttgccgcaaaccgcattcaagttgcatggagatacaggaagaaacgtc 2278
| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 182 actggagatcccttgccgcaaaccgcattcaagttgcatggagatatagacagaaacgtc 241
>gnl|LJGI|TC78200 similar to UniRef100_A9CRE4 Cluster: Cyclic nucleotide gated channel;
n=1; Malus x domestica|Rep: Cyclic nucleotide gated
channel - Malus domestica (Apple) (Malus sylvestris),
partial (24%)
Length = 1320
Score = 361 bits (182), Expect = 1e-98
Identities = 320/366 (87%)
Strand = Plus / Plus
Query: 1841 gtgagagactaagacaaaaaacatacattaaaggaagtaaaattttgagtcagggcagtt 1900
|||||||||||| ||| || |||||||| |||||||||| |||||||| | ||| ||
Sbjct: 12 gtgagagactaaaacagaagacatacatcaaaggaagtagaattttgactaggggtggtc 71
Query: 1901 tgatagagaagatggtatttgtggtgcgtggaaaattggagagcattggagaggatggaa 1960
| ||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct: 72 ttgtagagaagatggtctttgttgtgcgtggaaaattagagagcatcggagaagatggaa 131
Query: 1961 ctagaatgccattatctgaaggggacgcttgtggtgaagaacttatgacatggtatcttg 2020
| || | |||||||| |||||||| |||||||||||||||||| | |||||||||||||
Sbjct: 132 ttggagttccattatcggaaggggatgcttgtggtgaagaacttctcacatggtatcttg 191
Query: 2021 aacattcttctgtaagctcagatggtagaaaagtaaggcttcctggacagaggttggtta 2080
||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |
Sbjct: 192 aacattcttctgtaagcaaagatggtaaaaaagtaaggcttccaggacagaggttgcaga 251
Query: 2081 gcaacaggacagtaaagtgcttgacaaatgtggaggcattttcactctctgccgccgacc 2140
||||||| |||||||| ||||| ||||||||||||| |||||||||| ||| || || |
Sbjct: 252 gcaacagaacagtaaaatgcttaacaaatgtggagggattttcactccgtgctgcagatc 311
Query: 2141 ttgaagaagtcacgatacttttcacaagattcttgcggagccctcaggtccaaggagctt 2200
|||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 312 ttgaagaagtaacaattcttttcacaagattcttgcggagccctcaagtccaaggagctt 371
Query: 2201 taaggt 2206
||||||
Sbjct: 372 taaggt 377
Score = 95.6 bits (48), Expect = 1e-18
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 2203 aggtatgaatcgccttattggagatcccttgccgcaaaccgcattcaagttgcatggaga 2262
|||||||| || ||||| |||||||||||||| |||||| | ||||| ||||||||||||
Sbjct: 686 aggtatgattcaccttactggagatcccttgcagcaaacagaattcaggttgcatggaga 745
Query: 2263 tacaggaagaaacgtc 2278
||||||||||||||||
Sbjct: 746 tacaggaagaaacgtc 761
>gnl|LJGI|GO010489 similar to UniRef100_A7QJZ3 Cluster: Chromosome undetermined
scaffold_109, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_109, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(28%)
Length = 537
Score = 200 bits (101), Expect = 3e-50
Identities = 152/169 (89%)
Strand = Plus / Plus
Query: 2110 gtggaggcattttcactctctgccgccgaccttgaagaagtcacgatacttttcacaaga 2169
||||||| |||||||||| ||| || || ||||||||||| || || ||||||||||||
Sbjct: 2 gtggagggattttcactccgtgctgcagatcttgaagaagtaacaattcttttcacaaga 61
Query: 2170 ttcttgcggagccctcaggtccaaggagctttaaggtatgaatcgccttattggagatcc 2229
||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 62 ttcttgcggagccctcaagtccaaggagctttaaggtatgattcaccttactggagatcc 121
Query: 2230 cttgccgcaaaccgcattcaagttgcatggagatacaggaagaaacgtc 2278
||||| |||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 122 cttgcagcaaacagaattcaggttgcatggagatacaggaagaaacgtc 170
>gnl|LJGI|BP080087 homologue to UniRef100_A7QJZ5 Cluster: Chromosome undetermined
scaffold_109, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_109, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(5%)
Length = 382
Score = 196 bits (99), Expect = 4e-49
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1663 aggagagtaagacaggctgaacggtataattgggctgcaacaaggggggtgaatgaagaa 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aggagagtaagacaggctgaacggtataattgggctgcaacaaggggggtgaatgaagaa 272
Query: 1723 atggttatggagaatctgccagaagatctgcagagagac 1761
|||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atggttatggagaatctgccagaagatctgcagagagac 233