Miyakogusa Predicted Gene

Lj2g3v0621820.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0621820.1 tr|D7KRJ0|D7KRJ0_ARALL RNA recognition
motif-containing protein OS=Arabidopsis lyrata subsp. lyrata
,82,4e-16,no description,Nucleotide-binding, alpha-beta plait; RRM,RNA
recognition motif domain; SUBFAMILY
NOT,NODE_48006_length_829_cov_50.727383.path2.1
         (189 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC58861 similar to UniRef100_A7QJZ9 Cluster: Chromosome...   375   e-104

>gnl|LJGI|TC58861 similar to UniRef100_A7QJZ9 Cluster: Chromosome undetermined
           scaffold_109, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_109,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (52%)
          Length = 987

 Score =  375 bits (189), Expect = e-104
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggataaacttgcaaatagaccaagagggtttgcttttcttcggtatgcaacggaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atggataaacttgcaaatagaccaagagggtttgcttttcttcggtatgcaacggaagaa 449

                                                                       
Query: 61  gaatctcagaaggctattgagggaatgcatggaaagttcttggatggtagagtcatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaatctcagaaggctattgagggaatgcatggaaagttcttggatggtagagtcatattt 509

                                                                       
Query: 121 gtggaagttgccaaaccgagatcagagctacggcaaagattccagcaaaacactatgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtggaagttgccaaaccgagatcagagctacggcaaagattccagcaaaacactatgcag 569

                    
Query: 181 agatgaagt 189
           |||||||||
Sbjct: 570 agatgaagt 578