Miyakogusa Predicted Gene

Lj2g3v0620870.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0620870.1 CUFF.34836.1
         (330 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72613                                                      101   3e-21
gnl|LJGI|BP052630 similar to UniRef100_Q3R6Z4 Cluster: Ribonucle...    70   9e-12
gnl|LJGI|FS356124 similar to UniRef100_Q5C4R5 Cluster: SJCHGC046...    62   2e-09

>gnl|LJGI|TC72613 
          Length = 733

 Score =  101 bits (51), Expect = 3e-21
 Identities = 126/149 (84%), Gaps = 9/149 (6%)
 Strand = Plus / Plus

                                                                       
Query: 176 tttccaattttcctgtgccttataaatctgttatgtattcaatgaatcacaagtacatgc 235
           ||||| ||||||| || |||| | || |||||||||||||| |||||||  |||||||  
Sbjct: 578 tttcccattttccagtaccttttgaaactgttatgtattca-tgaatcagtagtacatat 636

                                                                       
Query: 236 taaggctgtgcattgtttatgacaactgc-------tatagtgctatgctacaacacatc 288
           |||||||||||||| ||||||||||||||       || | ||||||||||| |||||||
Sbjct: 637 taaggctgtgcattttttatgacaactgcagactgctacactgctatgctaccacacatc 696

                                        
Query: 289 ttgaactttttcctagttgtaatgatttt 317
           |||||||||||||||||| ||||||||||
Sbjct: 697 ttgaactttttcctagtt-taatgatttt 724


>gnl|LJGI|BP052630 similar to UniRef100_Q3R6Z4 Cluster: Ribonuclease BN; n=2; Xylella
           fastidiosa|Rep: Ribonuclease BN - Xylella fastidiosa
           Ann-1, partial (5%)
          Length = 297

 Score = 69.9 bits (35), Expect = 9e-12
 Identities = 63/71 (88%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                       
Query: 260 actgctatagtgctatgctacaacacatcttgaactttttcctagttgtaatgattttta 319
           ||||||| | ||||||||||| |||| |||||||||||||||||||| |||||||||| |
Sbjct: 71  actgctacactgctatgctaccacacctcttgaactttttcctagtt-taatgattttca 13

                      
Query: 320 tacttagcata 330
             |||||||||
Sbjct: 12  ctcttagcata 2


>gnl|LJGI|FS356124 similar to UniRef100_Q5C4R5 Cluster: SJCHGC04676 protein; n=1;
           Schistosoma japonicum|Rep: SJCHGC04676 protein -
           Schistosoma japonicum (Blood fluke), partial (7%)
          Length = 548

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 71/83 (85%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                       
Query: 176 tttccaattttcctgtgccttataaatctgttatgtattcaatgaatcacaagtacatgc 235
           ||||| ||||||| || |||| | || |||||||||||||| |||||||  |||||||  
Sbjct: 82  tttcccattttccagtaccttttgaaactgttatgtattca-tgaatcagtagtacatat 24

                                  
Query: 236 taaggctgtgcattgtttatgac 258
           |||||||||||||| ||||||||
Sbjct: 23  taaggctgtgcattttttatgac 1