Miyakogusa Predicted Gene
- Lj2g3v0571600.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0571600.1 tr|G7L0V3|G7L0V3_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g114710 PE=4 SV=1,30.28,1e-18,F-box domain,F-box
domain, cyclin-like; RNI-like,NULL; F-box,F-box domain, cyclin-like;
FBOX,F-box d,gene.g39219.t1.1
(852 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC598736 weakly similar to UniRef100_A7QK65 Cluster: Ch... 398 e-110
gnl|LJGI|FS342663 similar to UniRef100_A7QK60 Cluster: Chromosom... 88 1e-16
gnl|LJGI|TC63672 similar to UniRef100_A7QK60 Cluster: Chromosome... 86 4e-16
gnl|LJGI|TC62962 similar to UniRef100_A2Q1U7 Cluster: Cyclin-lik... 80 3e-14
gnl|LJGI|FS331731 similar to UniRef100_A7QK65 Cluster: Chromosom... 74 2e-12
gnl|LJGI|GO005265 similar to UniRef100_A5N307 Cluster: Predicted... 70 2e-11
gnl|LJGI|FS341858 similar to UniRef100_A7QK60 Cluster: Chromosom... 66 4e-10
gnl|LJGI|TC68218 similar to UniRef100_A7QK60 Cluster: Chromosome... 60 2e-08
gnl|LJGI|TC74171 58 9e-08
gnl|LJGI|TC82434 similar to UniRef100_A7QK60 Cluster: Chromosome... 54 1e-06
gnl|LJGI|TC60968 weakly similar to UniRef100_A7QK65 Cluster: Chr... 54 1e-06
>gnl|LJGI|DC598736 weakly similar to UniRef100_A7QK65 Cluster: Chromosome chr19
scaffold_111, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_111, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (15%)
Length = 553
Score = 398 bits (201), Expect = e-110
Identities = 409/476 (85%), Gaps = 3/476 (0%)
Strand = Plus / Plus
Query: 1 atggacgataggctcagcatcttaccggaccccatcctgtgccacatcctctcctttctg 60
||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 81 atggaagataggctcagcatcttaccggacccaatcctgtgccacattctctcttttctc 140
Query: 61 cccaccgatgaagcagttgccacaagctttctctccaagcggtggaggccgctgtggcgt 120
|| ||||| | |||| ||||||||||| ||||||| |||||||||| ||| || ||||||
Sbjct: 141 ccaaccgaggtagcaattgccacaagcgttctctcgaagcggtggaagcctctatggcgt 200
Query: 121 tcagtccctactttggactttgactacatttacggaaacaaagaggtggatgctcgcttt 180
|||||||| ||| | ||||| ||||||||||||| || |||||||| | || ||||||||
Sbjct: 201 tcagtccccactctcgacttcgactacatttacgaaagcaaagaggcgaattctcgcttt 260
Query: 181 attcaatctgtctatgcatttatcctctccagagatcaacaccaacctctccacaaattc 240
||||||||||| || ||||| ||| || |||||||||||| ||||||| |||||||||||
Sbjct: 261 attcaatctgtgtacgcattcatcttcaccagagatcaacgccaacctttccacaaattc 320
Query: 241 cgcatcagattatgggcaggtattactcagcaccctaaggacccttccaatgtcactatg 300
||||||||||||||||| || | ||| || | || |||| ||| |||||||| || |
Sbjct: 321 cgcatcagattatgggc-ggaa--actgaggagtctgaggaacctaccaatgtcgctgtt 377
Query: 301 tgggttaactttgcggtgcaacgccgacttgaacaccttgatatctgcctcatcaaccac 360
||| |||||||||| | |||||||| ||| | |||||||| ||||| ||| |||| |||
Sbjct: 378 tggcttaactttgccgcgcaacgccagcttcagcaccttgagatctgtctcttcaatcac 437
Query: 361 gagattcatccactaccaccacccatcataccccctgacatcttcttcacttgtagcaca 420
| ||||| ||||||||||||||| |||||||||||||||||| |||||||| ||||||
Sbjct: 438 cgggttcattcactaccaccacccaccataccccctgacatctttttcacttgcagcaca 497
Query: 421 aatcttgtggttctcaagttgtatgggttgagtttgaaacctctttcatctgttga 476
||||||||||||||||||||| |||| || || |||||||||||||| ||||||||
Sbjct: 498 aatcttgtggttctcaagttgcatggtttaagcttgaaacctctttcctctgttga 553
>gnl|LJGI|FS342663 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 675
Score = 87.7 bits (44), Expect = 1e-16
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 6 cgataggctcagcatcttaccggaccccatcctgtgccacatcctctcctttctgcccac 65
||||||| |||||| |||||| ||||| ||||| || ||||| ||||||||||| || ||
Sbjct: 160 cgataggatcagcaccttaccagacccaatcctctgtcacatactctcctttctcccaac 219
Query: 66 cgatgaagcagttgccacaagctttctctccaagcggtggaggccgctgtggcgttcagt 125
| | || | ||||||||||| ||||||||||| |||||| ||| ||||||||||||||
Sbjct: 220 caagcaaaccgttgccacaagtgttctctccaagaggtggaagccactgtggcgttcagt 279
>gnl|LJGI|TC63672 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 848
Score = 85.7 bits (43), Expect = 4e-16
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 417 cacaaatcttgtggttctcaagttgtatgggttgagtttgaaacctctttcatctgttga 476
|||||||||||||||||||||| || | ||||| || || | || |||| ||||||||
Sbjct: 663 cacaaatcttgtggttctcaagctggaggggttaagattcacttctttttcctctgttga 722
Query: 477 ttttcccttgcttaaaaccatgcatctacaagatttgcttttc 519
||||||||| ||||||||| || |||| |||||||||||||||
Sbjct: 723 ttttcccttccttaaaaccctgtatctgcaagatttgcttttc 765
>gnl|LJGI|TC62962 similar to UniRef100_A2Q1U7 Cluster: Cyclin-like F-box; FBD; n=1;
Medicago truncatula|Rep: Cyclin-like F-box; FBD -
Medicago truncatula (Barrel medic), partial (17%)
Length = 741
Score = 79.8 bits (40), Expect = 3e-14
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 16 agcatcttaccggaccccatcctgtgccacatcctctcctttctgcccaccgatgaagca 75
|||| |||||||||| | |||||||||| ||| ||||| ||||| || ||| | ||||
Sbjct: 165 agcagcttaccggacgcgatcctgtgccgcatactctcttttctcccaaccaaacaagcc 224
Query: 76 gttgccacaagctttctctccaagcggtggaggccgctgtggcgttcagtccctactttg 135
||||| || ||| |||||||||||||||||| || || |||||||||||| ||||| |
Sbjct: 225 gttgcaaccagcgttctctccaagcggtggatcccactatggcgttcagtctctactctc 284
Query: 136 gactttga 143
||||||||
Sbjct: 285 gactttga 292
>gnl|LJGI|FS331731 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 593
Score = 73.8 bits (37), Expect = 2e-12
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 16 agcatcttaccggaccccatcctgtgccacatcctctcctttctgcccaccgatgaagca 75
|||| |||||| ||| | ||||| ||||| || ||||| ||||| || ||| | ||||
Sbjct: 79 agcagcttaccagactcaatcctctgccatatactctcttttctcccaaccaagcaagct 138
Query: 76 gttgccacaagctttctctccaagcggtggaggccgctgtggcgttcagtccctactttg 135
|||||||||||| ||||||| ||||| |||| ||| || |||||||||||||| ||| ||
Sbjct: 139 gttgccacaagcgttctctcgaagcgatggatgcctctatggcgttcagtccccactctg 198
Query: 136 gactt 140
|||||
Sbjct: 199 gactt 203
>gnl|LJGI|GO005265 similar to UniRef100_A5N307 Cluster: Predicted transporter protein;
n=1; Clostridium kluyveri DSM 555|Rep: Predicted
transporter protein - Clostridium kluyveri DSM 555,
partial (5%)
Length = 721
Score = 69.9 bits (35), Expect = 2e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 784 gtggaagtgctcaagtatttccccaagcttcaagatcttgtcattga 830
|||||| |||||||||||| |||||||||||||| ||||||||||||
Sbjct: 173 gtggaattgctcaagtattgccccaagcttcaagttcttgtcattga 219
>gnl|LJGI|FS341858 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 700
Score = 65.9 bits (33), Expect = 4e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 159 caaagaggtggatgctcgctttattcaatctgtctatgcatttatcctctccagagatca 218
||||||||| ||||||| ||| ||||||| || |||||| ||||||||||| | |||||
Sbjct: 255 caaagaggtatatgctcgatttgttcaatcagtgtatgcagttatcctctcccgtgatca 314
Query: 219 acaccaacc 227
|||||||||
Sbjct: 315 acaccaacc 323
>gnl|LJGI|TC68218 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 724
Score = 60.0 bits (30), Expect = 2e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 76 gttgccacaagctttctctccaagcggtggaggccgctgtggcgttcagt 125
|||||||||||| ||||||||||||| |||| ||| || |||||||||||
Sbjct: 193 gttgccacaagcattctctccaagcgatggatgcctctatggcgttcagt 242
>gnl|LJGI|TC74171
Length = 595
Score = 58.0 bits (29), Expect = 9e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 784 gtggaagtgctcaagtatttccccaagcttcaagatcttgtcatt 828
|||||| | |||||||||| |||||||||||||| ||||||||||
Sbjct: 132 gtggaatttctcaagtattgccccaagcttcaagttcttgtcatt 176
>gnl|LJGI|TC82434 similar to UniRef100_A7QK60 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 756
Score = 54.0 bits (27), Expect = 1e-06
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 70 gaagcagttgccacaagctttctctccaagcggtggaggccgctgtggcgttcagtccc 128
||||| ||||| |||||| ||||||||| | |||||| |||||||||||||| |||||
Sbjct: 212 gaagccgttgcgacaagcgttctctccaggaggtggattccgctgtggcgttccgtccc 270
>gnl|LJGI|TC60968 weakly similar to UniRef100_A7QK65 Cluster: Chromosome chr19
scaffold_111, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_111, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (24%)
Length = 1563
Score = 54.0 bits (27), Expect = 1e-06
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 78 tgccacaagctttctctccaagcggtggaggccgctgtggcgttcagtccc 128
|||||| ||| | ||||||||||||||| ||| |||||||||||||||||
Sbjct: 141 tgccaccagcgtcctctccaagcggtggcagccactgtggcgttcagtccc 191