Miyakogusa Predicted Gene
- Lj2g3v0547900.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0547900.1 tr|D7L1W6|D7L1W6_ARALL SWIB complex BAF60b
domain-containing protein OS=Arabidopsis lyrata subsp.
ly,28.87,5e-18,SWIB/MDM2 domain,SWIB/MDM2 domain; GYF domain,GYF; no
description,NULL; seg,NULL; Plus-3,Plus-3; SWI,CUFF.34704.1
(2394 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64833 1072 0.0
gnl|LJGI|TC64294 weakly similar to UniRef100_A7QR02 Cluster: Chr... 706 0.0
gnl|LJGI|CB828861 similar to UniRef100_Q9FT92 Cluster: Uncharact... 664 0.0
>gnl|LJGI|TC64833
Length = 829
Score = 1072 bits (541), Expect = 0.0
Identities = 544/545 (99%)
Strand = Plus / Plus
Query: 1683 aagcagttcacccaagtcaattctcagtctcagtagagcatcagaagttcctcctttcaa 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagcagttcacccaagtcaattctcagtctcagtagagcatcagaagttcctcctttcaa 60
Query: 1743 tatggcgatgaatagctctatgttgagtcgcatttctcgtgacactgtgacagagcacct 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatggcgatgaatagctctatgttgagtcgcatttctcgtgacactgtgacagagcacct 120
Query: 1803 atggtctggtgtgcctgttcaacagcagccagcgcaacatacaaacactgctgcatacaa 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atggtctggtgtgcctgttcaacagcagccagcgcaacatacaaacactgctgcatacaa 180
Query: 1863 gaatggtggtatctctcagctagccgaatcaaatatatccaagatcgctcaacgaccact 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaatggtggtatctctcagctagccgaatcaaatatatccaagatcgctcaacgaccact 240
Query: 1923 ggagaagcaggtacagccatctcagattcaggttattgagctgagtgacgatgatgagga 1982
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agagaagcaggtacagccatctcagattcaggttattgagctgagtgacgatgatgagga 300
Query: 1983 ggagggaactgaagaatcaagcaccataaaacaggttccagctgatcagttacagtccat 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggagggaactgaagaatcaagcaccataaaacaggttccagctgatcagttacagtccat 360
Query: 2043 gatgcttgctacagatacagctgatcagttacagtccatgatatggcattacagagatcc 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatgcttgctacagatacagctgatcagttacagtccatgatatggcattacagagatcc 420
Query: 2103 acagggaaatattcaaggaccgttttccattagtcatctaaaacgttggagtgatgcttg 2162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acagggaaatattcaaggaccgttttccattagtcatctaaaacgttggagtgatgcttg 480
Query: 2163 ctacttttcaccagacttcaaagtttggaagttaggccaaagccaagatcaagctgttct 2222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctacttttcaccagacttcaaagtttggaagttaggccaaagccaagatcaagctgttct 540
Query: 2223 attgg 2227
|||||
Sbjct: 541 attgg 545
Score = 172 bits (87), Expect = 7e-42
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 2226 ggagcatgtattcagcatgttttcagagaagctaaccaggttgcggacctgttggctaat 2285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggagcatgtattcagcatgttttcagagaagctaaccaggttgcggacctgttggctaat 802
Query: 2286 gaaggctcatagggtctctatcggact 2312
|||||||||||||||||||||||||||
Sbjct: 803 gaaggctcatagggtctctatcggact 829
>gnl|LJGI|TC64294 weakly similar to UniRef100_A7QR02 Cluster: Chromosome undetermined
scaffold_147, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_147,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (32%)
Length = 718
Score = 706 bits (356), Expect = 0.0
Identities = 356/356 (100%)
Strand = Plus / Plus
Query: 1 atgaatggggaaacagatgttggttctttctggattgaggaaattaatgggcaggttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atgaatggggaaacagatgttggttctttctggattgaggaaattaatgggcaggttcag 422
Query: 61 acaactgttagaaagaaaaggaaatacacgacaaggaaaaaggagtacaatgggtggggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acaactgttagaaagaaaaggaaatacacgacaaggaaaaaggagtacaatgggtggggg 482
Query: 121 tcaacttcccttatttggtttctcgactccattggtaaagatacaaccaacgagatagcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcaacttcccttatttggtttctcgactccattggtaaagatacaaccaacgagatagcg 542
Query: 181 caaagtgaggtggctaatattataagtgactacgtgaagcataagaatcttcttcatcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 caaagtgaggtggctaatattataagtgactacgtgaagcataagaatcttcttcatcct 602
Query: 241 acgaaaaagaaaagaattgtgtgtgatgagaagcttcattcgctcttcggaaggaagagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acgaaaaagaaaagaattgtgtgtgatgagaagcttcattcgctcttcggaaggaagagt 662
Query: 301 attagccgcttgaaaatcagtgacttgctcgagtcgcacattgcgaagaactgcga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 attagccgcttgaaaatcagtgacttgctcgagtcgcacattgcgaagaactgcga 718
>gnl|LJGI|CB828861 similar to UniRef100_Q9FT92 Cluster: Uncharacterized protein
At5g08430; n=1; Arabidopsis thaliana|Rep: Uncharacterized
protein, partial (5%)
Length = 403
Score = 664 bits (335), Expect = 0.0
Identities = 384/405 (94%), Gaps = 2/405 (0%)
Strand = Plus / Plus
Query: 906 cgctctgttagaaaatcttattgaacgagctaatgagaagggttggcgtcgagaactaga 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgctctgttagaaaatcttattgaacgagctaatgagaagggttggcgtcgagaactaga 60
Query: 966 tgagtacctacaaaggagggagaaacttcagagtccagatgaacaggaacggttgttgca 1025
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 tgagtacctacaaaggagggagaaacttcag--tccagatgaacaggaacggttgttgca 118
Query: 1026 tgaaatccctcaagttattgcagatgacttagaattagaatctacaacgccagatgttgc 1085
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tgaaatccctcaagttatttcagatgacttagaattagaatctacaacgccagatgttgc 178
Query: 1086 agatnnnnnnnnnnnnnnnnngttgcaagacttatggcagcctacctgtacaaaaggaac 1145
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agataaaaaagtagaaaaaaagttgcaagacttatggcagcctacctgtacaaaaggaac 238
Query: 1146 tttagtgaccgaggtcccaaaaacagttgcaaatggttatgcatgcaaggttaccgaact 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 239 tttagtgaccgaggtcccaaaaacagttgcaaatggttatgcatgcaaggttaccaaact 298
Query: 1206 gtgcaagaagtttcagggttcagatgaacaggaacggttattgcatgaaatccctcaagt 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtgcaagaagtttcagggttcagatgaacaggaacggttattgcatgaaatccctcaagt 358
Query: 1266 taacgtagatgatttagaatcagaacctacaacgccagatgttga 1310
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 taacgtagatgatttagaatcagaacctacaacgccagatgttga 403
Score = 293 bits (148), Expect = 3e-78
Identities = 268/308 (87%)
Strand = Plus / Plus
Query: 1226 cagatgaacaggaacggttattgcatgaaatccctcaagttaacgtagatgatttagaat 1285
||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct: 94 cagatgaacaggaacggttgttgcatgaaatccctcaagttatttcagatgacttagaat 153
Query: 1286 cagaacctacaacgccagatgttgaagataaaaaagaagaagaaaagctacatgacttat 1345
|||| |||||||||||||||||| ||||||||||| |||| ||||| | || |||||||
Sbjct: 154 tagaatctacaacgccagatgttgcagataaaaaagtagaaaaaaagttgcaagacttat 213
Query: 1346 ggcagcctacctgtacaaaagcctctttagtgactgaggtcccaaaaacagttgcaaatg 1405
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 214 ggcagcctacctgtacaaaaggaactttagtgaccgaggtcccaaaaacagttgcaaatg 273
Query: 1406 gttttgcatgcaatgttaccgaactgttcaataagcttcagggttcagatgaagaggaat 1465
||| ||||||||| |||||| |||||| ||| ||| ||||||||||||||||| |||||
Sbjct: 274 gttatgcatgcaaggttaccaaactgtgcaagaagtttcagggttcagatgaacaggaac 333
Query: 1466 gtgtattgcatgaaattcctaatgttattgcagatgatcttgaatcaaaatccacaacgc 1525
| ||||||||||||| ||| | |||| | ||||||| | |||||| || | |||||||
Sbjct: 334 ggttattgcatgaaatccctcaagttaacgtagatgatttagaatcagaacctacaacgc 393
Query: 1526 cggatgtt 1533
| ||||||
Sbjct: 394 cagatgtt 401
Score = 67.9 bits (34), Expect = 3e-10
Identities = 148/186 (79%)
Strand = Plus / Plus
Query: 1471 ttgcatgaaattcctaatgttattgcagatgatcttgaatcaaaatccacaacgccggat 1530
||||||||||| ||| | |||||| ||||||| | |||| | |||| |||||||| |||
Sbjct: 114 ttgcatgaaatccctcaagttatttcagatgacttagaattagaatctacaacgccagat 173
Query: 1531 gttcctgataaagaagtggaaagcaatttacaagaggtatggcagactaccaatacaaaa 1590
||| | |||||| |||| |||| || || ||||| |||||||| ||||| |||||||
Sbjct: 174 gttgcagataaaaaagtagaaaaaaagttgcaagacttatggcagcctacctgtacaaaa 233
Query: 1591 acatgtttagtaacagaggtctcaaaagcagtcacagatggttttgcatgcaaggctaca 1650
| |||||| || |||||| ||||| |||| || |||||| ||||||||||| |||
Sbjct: 234 ggaactttagtgaccgaggtcccaaaaacagttgcaaatggttatgcatgcaaggttacc 293
Query: 1651 aaactg 1656
||||||
Sbjct: 294 aaactg 299