Miyakogusa Predicted Gene
- Lj2g3v0536880.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0536880.1 tr|G7KPA0|G7KPA0_MEDTR Chloride channel protein
CLC-c OS=Medicago truncatula GN=MTR_6g065650 PE=4 SV,82.32,0,CHLORIDE
CHANNEL CLC, PLANT,NULL; CHLORIDE CHANNEL,NULL; Voltage_CLC,Chloride
channel, voltage gated,CUFF.34699.1
(2394 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72370 similar to UniRef100_A7QR06 Cluster: Chromosome... 1477 0.0
gnl|LJGI|TC79818 similar to UniRef100_A7QR06 Cluster: Chromosome... 504 e-141
gnl|LJGI|GO005971 similar to UniRef100_P93567 Cluster: Chloride ... 210 3e-53
>gnl|LJGI|TC72370 similar to UniRef100_A7QR06 Cluster: Chromosome undetermined
scaffold_147, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_147, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(31%)
Length = 1146
Score = 1477 bits (745), Expect = 0.0
Identities = 754/757 (99%)
Strand = Plus / Plus
Query: 1638 caccatgagaatgacagtctcactttgtgttatactacttgagctcactaatgatctctt 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccatgagaatgacagtctcactttgtgttatactacttgagctcactaatgatctctt 60
Query: 1698 gttacttccccttgtgatgctggccttgttaatctcgaaaactgtggctgattgcttcaa 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttacttccccttgtgatgctggccttgttaatctcgaaaactgtggctgattgcttcaa 120
Query: 1758 caagggcgtctacgatcaaattctgaagatcaaagggcttccttatttggaggctcatgc 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caagggcgtctacgatcaaattctgaagatcaaagggcttccttatttggaggctcatgc 180
Query: 1818 agaaccttacatgaggaatattgttgcacgtgatgttgtctcgggtccattgatgacctt 1877
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaaccttatatgaggaatattgttgcacgtgatgttgtctcgggtccattgatgacctt 240
Query: 1878 ttctggcattgaaagggttgcaaatataatgcatgttttgaacactacagggcataacgg 1937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttctggcattgaaagggttgcaaatataatgcatgttttgaacactacagggcataacgg 300
Query: 1938 atttcctgtcattgatgaaccgcctttctcagattcaccagaattgtgtgggcttgtact 1997
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 301 atttcctgtcattgatgaaccgcctttctcagattcaccagaattgtttgggcttgtact 360
Query: 1998 gaggtctcatttactagttttgctgaaggcaaagaactttacaagagacagggtgttcgc 2057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaggtctcatttactagttttgctgaaggcaaagaactttacaagagacagggtgttcgc 420
Query: 2058 ggatcagagtatcatagataaagtttctgtattagattttgggaaagcaggatcagggaa 2117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggatcagagtatcatagataaagtttctgtattagattttgggaaagcaggatcagggaa 480
Query: 2118 gggaatcaaattagaggatctagatttagaagaagaagagttggatatgtatgttgatct 2177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gggaatcaaattagaggatctagatttagaagaagaagagttggatatgtatgttgatct 540
Query: 2178 ccatccaattactaattcatccccacacactgtagttgagacaatgtcactagccaaagc 2237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccatccaattactaattcatccccacacactgtagttgagacaatgtcactagccaaagc 600
Query: 2238 tgccattattttccgccaacaaggactcaggcacatgtgtgttgttccaaagagccaagg 2297
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 601 tgccattattttccgccaacaaggactcaggcacatgtgtgttgctccaaagagccaagg 660
Query: 2298 gagacctccagttgttgggattctaacacgccatgatttcatgcctgagcatgttttggg 2357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gagacctccagttgttgggattctaacacgccatgatttcatgcctgagcatgttttggg 720
Query: 2358 gctttaccctgatattaaacatcacaaatggcactga 2394
|||||||||||||||||||||||||||||||||||||
Sbjct: 721 gctttaccctgatattaaacatcacaaatggcactga 757
>gnl|LJGI|TC79818 similar to UniRef100_A7QR06 Cluster: Chromosome undetermined
scaffold_147, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_147,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (4%)
Length = 857
Score = 504 bits (254), Expect = e-141
Identities = 257/258 (99%)
Strand = Plus / Plus
Query: 1 atgacacaatctggtggtgaagttgttaaggagatggataaagaagaaaatgagaaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 atgacacaatctggtggtgaagttgttaaggagatggataaagaagaaaatgagaaccat 222
Query: 61 gctgctgatgatgtgcgcgatgtagaaaatggtggtcgattggatgggaatgatgaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gctgctgatgatgtgcgcgatgtagaaaatggtggtcgattggatgggaatgatgaggaa 282
Query: 121 attggaaggtactggtcagagttatctgaaaggaacagggcatatgcagagccacttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 attggaaggtactggtcagagttatctgaaaggaacagggcatatgcagagccacttctt 342
Query: 181 gcaaagaggactaacactacctcccagattgctattgttggatccaacctctaccctatt 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gtaaagaggactaacactacctcccagattgctattgttggatccaacctctaccctatt 402
Query: 241 gaaagccttgactatgag 258
||||||||||||||||||
Sbjct: 403 gaaagccttgactatgag 420
>gnl|LJGI|GO005971 similar to UniRef100_P93567 Cluster: Chloride channel Stclc1; n=1;
Solanum tuberosum|Rep: Chloride channel Stclc1 - Solanum
tuberosum (Potato), partial (5%)
Length = 563
Score = 210 bits (106), Expect = 3e-53
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 899 ggtggaggagtgctctactttggaggacatttttcactacagcagtggttgctattgttt 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggtggaggagtgctctactttggaggacatttttcactacagcagtggttgctattgttt 395
Query: 959 taagatctgcaattcagatttgttcctcagggaattgtgggctatttggg 1008
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 taagatccgcaattcagatttgttcctcagggaattgtgggctatttggg 445