Miyakogusa Predicted Gene

Lj2g3v0533560.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0533560.1 Non Chatacterized Hit- tr|A9P0S0|A9P0S0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,37.78,5e-18,RNA-binding domain, RBD,NULL; RRM_1,RNA recognition
motif domain; no description,Nucleotide-binding,,CUFF.34681.1
         (558 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66463 similar to UniRef100_A7Q2Q8 Cluster: Chromosome...  1106   0.0  

>gnl|LJGI|TC66463 similar to UniRef100_A7Q2Q8 Cluster: Chromosome chr1 scaffold_46,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_46, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (60%)
          Length = 818

 Score = 1106 bits (558), Expect = 0.0
 Identities = 558/558 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtcgcaagcgggacagacccaatgtttcccgccaagcttccaagcgccgccgcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  atgagtcgcaagcgggacagacccaatgtttcccgccaagcttccaagcgccgccgcccc 119

                                                                       
Query: 61  ctgccggagcccgtggaggaggagagaccctcgattaggccgtcaccgccgtcagcattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctgccggagcccgtggaggaggagagaccctcgattaggccgtcaccgccgtcagcattg 179

                                                                       
Query: 121 gtcgtaatgggtctccctatcgactgctctgtcctcgatctcaagtcccgattcgagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gtcgtaatgggtctccctatcgactgctctgtcctcgatctcaagtcccgattcgagatc 239

                                                                       
Query: 181 tacggcgccatctctcgcatccgcatcgaccgcgacgccgtcggatatatcacctaccgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tacggcgccatctctcgcatccgcatcgaccgcgacgccgtcggatatatcacctaccgg 299

                                                                       
Query: 241 agtaaggactccgctgacgccgccatcgccgccggtgttgacccttccttcggaatcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agtaaggactccgctgacgccgccatcgccgccggtgttgacccttccttcggaatcacc 359

                                                                       
Query: 301 gtcaattcgaaaaaggttcaggttctgtgggcaactgaccctctagccatgtggagggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtcaattcgaaaaaggttcaggttctgtgggcaactgaccctctagccatgtggagggaa 419

                                                                       
Query: 361 ggagttggtaataacaaggataaaagctccatgtcaaagcttgtgcgtgctgaggtgccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggagttggtaataacaaggataaaagctccatgtcaaagcttgtgcgtgctgaggtgccc 479

                                                                       
Query: 421 ttgagaaggcatggaaggggtaatagactcgcatcatctatagggaataccaaaagtatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttgagaaggcatggaaggggtaatagactcgcatcatctatagggaataccaaaagtatt 539

                                                                       
Query: 481 caggataggttgggtacttcagttctagaagcgcctttcaggggcagggaaattgttgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 caggataggttgggtacttcagttctagaagcgcctttcaggggcagggaaattgttgct 599

                             
Query: 541 tatgatgatattctgtaa 558
           ||||||||||||||||||
Sbjct: 600 tatgatgatattctgtaa 617