Miyakogusa Predicted Gene
- Lj2g3v0523230.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0523230.1 Non Chatacterized Hit- tr|I1L450|I1L450_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,37.24,2e-19,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PPR,Pentatricopeptide repeat;
PPR_2,P,CUFF.34659.1
(454 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chr... 210 6e-54
gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Ch... 202 1e-51
gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Te... 143 1e-33
gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Ch... 101 4e-21
gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Te... 90 1e-17
>gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 1411
Score = 210 bits (106), Expect = 6e-54
Identities = 259/310 (83%)
Strand = Plus / Plus
Query: 137 gcacatacaatatacttatggatggactatgcaaagctggaagacttaaggatgcgcaag 196
||||||||| |||||||||||||||||| ||||||| |||||||||||| |||| ||||
Sbjct: 18 gcacatacagtatacttatggatggactgtgcaaagaaggaagacttaagaatgcacaag 77
Query: 197 agatttttcatgatcttttgataaaaggctatcatataactgtccatacatatactgtta 256
| ||||||| |||||||| | |||||||||||| ||||||||| | ||||||| |||
Sbjct: 78 atgtttttcaggatcttttaactaaaggctatcatgtaactgtcccgatatatactatta 137
Query: 257 tgatcaatggactttgtaaagaaggcttgtttgatgaagcgttggccttgctgtcaaaaa 316
|||||||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct: 138 tgatcaatgggctttgtaaagagggtttgtttgatgaagcattggccttgctgtctaaaa 197
Query: 317 tggaaattgagggttgtactcctaatgctataacttttgaatctattatccgttcactct 376
||||| | ||||| | ||||||||||||||||| ||| | || || ||| | || |
Sbjct: 198 tggaagacaatggttgcatgcctaatgctataactttcgaaacaatcattcgtgctctat 257
Query: 377 ttgaaaatggtgagaatgacaaggctgagaaacttcttcttgaaatgattgataaaggtc 436
|||| || ||||||||| | | ||| ||||||||||| | ||||||||| | | |||||
Sbjct: 258 ttgagaagggtgagaattatatggcagagaaacttctacgtgaaatgatggcaagaggtc 317
Query: 437 tactggaaaa 446
|| |||||||
Sbjct: 318 tattggaaaa 327
>gnl|LJGI|GO030841 weakly similar to UniRef100_A7R617 Cluster: Chromosome undetermined
scaffold_1129, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_1129,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (13%)
Length = 688
Score = 202 bits (102), Expect = 1e-51
Identities = 246/294 (83%)
Strand = Plus / Minus
Query: 29 taatcacctataattctttattggatgctttatgcaagagccatcatgttgacaaagcaa 88
||||||| || |||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 567 taatcacatacaattctttattggatgctttatgcaaaagccatcatgttgacagggcaa 508
Query: 89 ttgcattgatcaagaaaattaaagaccagggtgttcagccagatttatgcacatacaata 148
|| | |||||||||||||| |||||||||||| |||| || | |||||||||||
Sbjct: 507 tttctttgatcaagaaaatgaaagaccagggtcttcaaccttcgatgcacacatacaata 448
Query: 149 tacttatggatggactatgcaaagctggaagacttaaggatgcgcaagagatttttcatg 208
||||||||||||||||||||||||| || ||| || || |||| |||||| ||||||| |
Sbjct: 447 tacttatggatggactatgcaaagcaggcagagttgagaatgcacaagaggtttttcagg 388
Query: 209 atcttttgataaaaggctatcatataactgtccatacatatactgttatgatcaatggac 268
||||||| || |||||||| || || ||| | | ||||| ||||||| ||||| |
Sbjct: 387 atcttttaattaaaggctacaatttagatgtacggtcgtatacaattatgattaatgggc 328
Query: 269 tttgtaaagaaggcttgtttgatgaagcgttggccttgctgtcaaaaatggaaa 322
|||||||||| ||||||||||||||||| ||| | || |||||||||||||||
Sbjct: 327 tttgtaaagagggcttgtttgatgaagcattgacactgatgtcaaaaatggaaa 274
>gnl|LJGI|AV772727 weakly similar to UniRef100_Q2HVJ3 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (12%)
Length = 528
Score = 143 bits (72), Expect = 1e-33
Identities = 219/268 (81%)
Strand = Plus / Minus
Query: 41 attctttattggatgctttatgcaagagccatcatgttgacaaagcaattgcattgatca 100
|||||||||| |||||| ||||||||| |||||||||||||| || || ||||| |
Sbjct: 514 attctttattagatgctctatgcaagaatcatcatgttgacaaggccatcgcattacttg 455
Query: 101 agaaaattaaagaccagggtgttcagccagatttatgcacatacaatatacttatggatg 160
||| | |||||||| |||| |||| |||||| | | ||||||||||||| |||| ||||
Sbjct: 454 agagagttaaagacaagggcattcaaccagatatgtacacatacaatataattattgatg 395
Query: 161 gactatgcaaagctggaagacttaaggatgcgcaagagatttttcatgatcttttgataa 220
||||||||||| ||||||| | |||||||| |||||| ||||||| ||||||||||| |
Sbjct: 394 gactatgcaaaagtggaagagtaaaggatgcacaagagctttttcaggatcttttgatta 335
Query: 221 aaggctatcatataactgtccatacatatactgttatgatcaatggactttgtaaagaag 280
||||||||| ||| ||| ||||||| | | ||||||||||| ||||||| ||| |
Sbjct: 334 aaggctatcggctaaatgttgtgacatataatataatgatcaatgggctttgtatagagg 275
Query: 281 gcttgtttgatgaagcgttggccttgct 308
| |||| |||||||| ||||||||||
Sbjct: 274 gtttgtccgatgaagcactggccttgct 247
>gnl|LJGI|AV766731 weakly similar to UniRef100_A7P2U1 Cluster: Chromosome chr1
scaffold_5, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 576
Score = 101 bits (51), Expect = 4e-21
Identities = 216/271 (79%)
Strand = Plus / Minus
Query: 157 gatggactatgcaaagctggaagacttaaggatgcgcaagagatttttcatgatcttttg 216
|||||||||||||||| |||||| |||||| ||| |||||||||||||| | |||||||
Sbjct: 313 gatggactatgcaaagttggaaggcttaagattgcccaagagatttttcaggttcttttg 254
Query: 217 ataaaaggctatcatataactgtccatacatatactgttatgatcaatggactttgtaaa 276
| ||||||| || ||| |||| || |||||||||||||||||||| |||||||
Sbjct: 253 agcgaaggctacaatttaaatgtcatgacgtatactgttatgatcaatgggtattgtaaa 194
Query: 277 gaaggcttgtttgatgaagcgttggccttgctgtcaaaaatggaaattgagggttgtact 336
||||| || ||||||| || |||| ||||||||||||||||| | ||||| | |
Sbjct: 193 gaaggtttacttgatgaggctcaggccctgctgtcaaaaatggaagacaatggttgcatt 134
Query: 337 cctaatgctataacttttgaatctattatccgttcactctttgaaaatggtgagaatgac 396
||||||||| | | |||| || | || || || | ||||||||||| |||||||||
Sbjct: 133 cctaatgctgtgaattttcaaacaataatttgtgctctctttgaaaaaaatgagaatgat 74
Query: 397 aaggctgagaaacttcttcttgaaatgattg 427
||||| |||| |||| ||| |||||||||||
Sbjct: 73 aaggcagagagactttttcgtgaaatgattg 43
>gnl|LJGI|BP047039 weakly similar to UniRef100_Q1SMZ4 Cluster: Tetratricopeptide-like
helical; n=1; Medicago truncatula|Rep:
Tetratricopeptide-like helical - Medicago truncatula
(Barrel medic), partial (9%)
Length = 527
Score = 89.7 bits (45), Expect = 1e-17
Identities = 141/173 (81%)
Strand = Plus / Minus
Query: 255 tatgatcaatggactttgtaaagaaggcttgtttgatgaagcgttggccttgctgtcaaa 314
|||||||||||||||||||||||| ||||||||||||||||| ||| | ||| |||| ||
Sbjct: 478 tatgatcaatggactttgtaaagagggcttgtttgatgaagcattgacattgatgtcgaa 419
Query: 315 aatggaaattgagggttgtactcctaatgctataacttttgaatctattatccgttcact 374
||||||| | ||||| | | | || | |||||||||||| | ||||| | | ||
Sbjct: 418 aatggaagacaatggttgcatccatgatccaataacttttgaaacaattatttctgctct 359
Query: 375 ctttgaaaatggtgagaatgacaaggctgagaaacttcttcttgaaatgattg 427
|||||||| ||||| ||||| ||||| ||||| ||||||| |||||||||||
Sbjct: 358 ttttgaaaaaggtgaaaatgataaggcagagaagcttcttcgtgaaatgattg 306