Miyakogusa Predicted Gene

Lj2g3v0521150.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0521150.2 Non Chatacterized Hit- tr|B9RM74|B9RM74_RICCO
Pentatricopeptide repeat-containing protein, putative
,23.33,9e-19,PPR: pentatricopeptide repeat domain,Pentatricopeptide
repeat; PPR_2,Pentatricopeptide repeat; PPR,P,CUFF.34651.2
         (1058 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS346680 weakly similar to UniRef100_A7PJG0 Cluster: Ch...   141   1e-32

>gnl|LJGI|FS346680 weakly similar to UniRef100_A7PJG0 Cluster: Chromosome chr12
            scaffold_18, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (17%)
          Length = 589

 Score =  141 bits (71), Expect = 1e-32
 Identities = 197/239 (82%)
 Strand = Plus / Minus

                                                                        
Query: 805  gaaggactactggatgaggctgaagagttgcttatgagaatggaagagaatggatgtcca 864
            |||||| || ||||||| |||||||| || || ||||  |||||||||||||| ||||| 
Sbjct: 354  gaaggattattggatgatgctgaagacttactgatgaatatggaagagaatggctgtccc 295

                                                                        
Query: 865  cctaataggtgttcttataatgtctttgtccatggattgctgcgaaaacttgatatttca 924
            ||||||   ||| |||||||||| || || || ||||| ||||||| |  |||||||| |
Sbjct: 294  cctaatgcttgtacttataatgttttggttcaaggattactgcgaatatatgatatttta 235

                                                                        
Query: 925  aggtcagaaaagtaccttcaaataatgaaatgtaaaggttttccagtagatgctaacacc 984
            ||||||| ||| ||||||||| |||||||| | ||||||||| | | |||||||| ||| 
Sbjct: 234  aggtcagcaaaataccttcaactaatgaaaggcaaaggtttttctgcagatgctaccact 175

                                                                       
Query: 985  acagagttgcttatatgcatctactctgctaataaaggagataatgcatttcaagagtt 1043
            ||||| ||||||||  ||  || ||||| || ||||||||| |||||||||||||||||
Sbjct: 174  acagaattgcttatcagctccttctctggtattaaaggagaaaatgcatttcaagagtt 116