Miyakogusa Predicted Gene
- Lj2g3v0509060.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0509060.1 Non Chatacterized Hit- tr|I1NIC8|I1NIC8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55161
PE,85.42,0,seg,NULL; Chlorophyll a-b binding protein,Chlorophyll a/b
binding protein domain; SUBFAMILY NOT NAME,CUFF.35284.1
(843 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68768 homologue to UniRef100_Q0PWS5 Cluster: Chloropl... 1671 0.0
gnl|LJGI|TC80505 homologue to UniRef100_Q0PWS5 Cluster: Chloropl... 650 0.0
gnl|LJGI|TC82488 similar to UniRef100_Q8W537 Cluster: Chl a/b-bi... 357 7e-98
gnl|LJGI|AV779517 similar to UniRef100_Q0PWS5 Cluster: Chloropla... 343 1e-93
gnl|LJGI|AV429238 similar to UniRef100_Q8W537 Cluster: Chl a/b-b... 333 1e-90
gnl|LJGI|AV774664 309 2e-83
gnl|LJGI|AV776165 similar to UniRef100_Q40039 Cluster: Precursor... 289 1e-77
gnl|LJGI|AV770443 52 6e-06
>gnl|LJGI|TC68768 homologue to UniRef100_Q0PWS5 Cluster: Chloroplast pigment-binding
protein CP26; n=1; Nicotiana tabacum|Rep: Chloroplast
pigment-binding protein CP26 - Nicotiana tabacum (Common
tobacco), partial (90%)
Length = 1131
Score = 1671 bits (843), Expect = 0.0
Identities = 843/843 (100%)
Strand = Plus / Plus
Query: 1 atggcttcccttggcatgtcagaaatgcttggaaacgccatcaacttcggtggcgccacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 atggcttcccttggcatgtcagaaatgcttggaaacgccatcaacttcggtggcgccacc 125
Query: 61 aggtcagcaccatctccctctagccccgccaccttcaagacagtggctcttttctccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aggtcagcaccatctccctctagccccgccaccttcaagacagtggctcttttctccaag 185
Query: 121 aagaagccagcaccaaagcagaaacctgttgctgttgctcctgctgacgaggaactcgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aagaagccagcaccaaagcagaaacctgttgctgttgctcctgctgacgaggaactcgcc 245
Query: 181 aagtggtatggtcctgacagaaggatcttcttgcctgatggactcttggaccgatctgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagtggtatggtcctgacagaaggatcttcttgcctgatggactcttggaccgatctgag 305
Query: 241 atcccagagtacttgactggagaagtccccggagactatggttatgacccatttggtctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atcccagagtacttgactggagaagtccccggagactatggttatgacccatttggtctt 365
Query: 301 ggcaagaagccagaggacttcgccaaatatcaggcatttgaattgattcacgccagatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggcaagaagccagaggacttcgccaaatatcaggcatttgaattgattcacgccagatgg 425
Query: 361 gcgatgcttggtgctgccggattcatcattcctgaggccttaaacaaatatggagccaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gcgatgcttggtgctgccggattcatcattcctgaggccttaaacaaatatggagccaac 485
Query: 421 tgtggtcctgaggctgtttggttcaagaccggagctcttcttcttgatgggaatacgttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgtggtcctgaggctgtttggttcaagaccggagctcttcttcttgatgggaatacgttg 545
Query: 481 aactactttggcaaacccatccccatcaatctcgttgttgctgtcgttgctgaggttgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aactactttggcaaacccatccccatcaatctcgttgttgctgtcgttgctgaggttgtt 605
Query: 541 cttttgggaggtgcagagtactacagaattactaatggactggatttcgaagacaagctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cttttgggaggtgcagagtactacagaattactaatggactggatttcgaagacaagctt 665
Query: 601 catccaggcggtccattcgacccgttggggcttgcaaaggatccggaccaggctgcgctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 catccaggcggtccattcgacccgttggggcttgcaaaggatccggaccaggctgcgctg 725
Query: 661 ctgaaggtgaaggaaatcaagaacggcagacttgctatgttttccatgcttggtttcttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctgaaggtgaaggaaatcaagaacggcagacttgctatgttttccatgcttggtttcttc 785
Query: 721 atccaagcttatgtgaccggagatggtcctgttgagaaccttgcaaaacatctcagtgac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atccaagcttatgtgaccggagatggtcctgttgagaaccttgcaaaacatctcagtgac 845
Query: 781 ccttttggcaacaacttgctcacagtcattgccgggaatgctgagagagctccaactctg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ccttttggcaacaacttgctcacagtcattgccgggaatgctgagagagctccaactctg 905
Query: 841 tga 843
|||
Sbjct: 906 tga 908
>gnl|LJGI|TC80505 homologue to UniRef100_Q0PWS5 Cluster: Chloroplast pigment-binding
protein CP26; n=1; Nicotiana tabacum|Rep: Chloroplast
pigment-binding protein CP26 - Nicotiana tabacum (Common
tobacco), partial (34%)
Length = 640
Score = 650 bits (328), Expect = 0.0
Identities = 328/328 (100%)
Strand = Plus / Plus
Query: 1 atggcttcccttggcatgtcagaaatgcttggaaacgccatcaacttcggtggcgccacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atggcttcccttggcatgtcagaaatgcttggaaacgccatcaacttcggtggcgccacc 336
Query: 61 aggtcagcaccatctccctctagccccgccaccttcaagacagtggctcttttctccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aggtcagcaccatctccctctagccccgccaccttcaagacagtggctcttttctccaag 396
Query: 121 aagaagccagcaccaaagcagaaacctgttgctgttgctcctgctgacgaggaactcgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aagaagccagcaccaaagcagaaacctgttgctgttgctcctgctgacgaggaactcgcc 456
Query: 181 aagtggtatggtcctgacagaaggatcttcttgcctgatggactcttggaccgatctgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aagtggtatggtcctgacagaaggatcttcttgcctgatggactcttggaccgatctgag 516
Query: 241 atcccagagtacttgactggagaagtccccggagactatggttatgacccatttggtctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atcccagagtacttgactggagaagtccccggagactatggttatgacccatttggtctt 576
Query: 301 ggcaagaagccagaggacttcgccaaat 328
||||||||||||||||||||||||||||
Sbjct: 577 ggcaagaagccagaggacttcgccaaat 604
Score = 79.8 bits (40), Expect = 3e-14
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 351 cgccagatgggcgatgcttggtgctgccggattcatcattcctg 394
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cgccaaatgggcgatgcttggtgctgccggattcatcattcctg 640
>gnl|LJGI|TC82488 similar to UniRef100_Q8W537 Cluster: Chl a/b-binding protein; n=1;
Retama raetam|Rep: Chl a/b-binding protein - Retama
raetam, partial (49%)
Length = 946
Score = 357 bits (180), Expect = 7e-98
Identities = 204/208 (98%), Gaps = 3/208 (1%)
Strand = Plus / Plus
Query: 2 tggcttcccttggc-atgtcagaaatgcttggaaacgccatcaacttcggtggcgccacc 60
|||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 741 tggcttcccttggccatgtcagaaatgcttggaa-cgccatca-cttcggtggcgccacc 798
Query: 61 aggtcagcaccatctccctctagccccgccaccttcaagacagtggctcttttctccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aggtcagcaccatctccctctagccccgccaccttcaagacagtggctcttttctccaag 858
Query: 121 aagaagccagcaccaaagcagaaacctgttgctgttgctcctgctgacgaggaactcgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aagaagccagcaccaaagcagaaacctgttgctgttgctcctgctgacgaggaactcgcc 918
Query: 181 aagtggtatggtcctgacagaaggatct 208
||||| ||||||||||||||||||||||
Sbjct: 919 aagtgctatggtcctgacagaaggatct 946
>gnl|LJGI|AV779517 similar to UniRef100_Q0PWS5 Cluster: Chloroplast pigment-binding
protein CP26; n=1; Nicotiana tabacum|Rep: Chloroplast
pigment-binding protein CP26 - Nicotiana tabacum (Common
tobacco), partial (33%)
Length = 514
Score = 343 bits (173), Expect = 1e-93
Identities = 299/337 (88%), Gaps = 3/337 (0%)
Strand = Plus / Minus
Query: 509 atctcgttgttgctgtcgttgctgaggttgttcttttgggaggtgcagagtactacagaa 568
|||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 490 atctcgatgttgctgtcgtttctgagggtgttcttttgggaggtgcagagtactacagaa 431
Query: 569 ttactaatggactggatttcgaagacaagcttcatccaggcggtccattcgacccgttgg 628
||||| ||||||||| |||||||||| | |||||| |||||||||| |||||||| | |
Sbjct: 430 ttacttatggactgggtttcgaagaccaacttcattcaggcggtcccttcgacccctgcg 371
Query: 629 ggcttgcaaaggatccggaccaggctgcgctgctgaaggtgaaggaaatcaagaacggca 688
||||||| ||||||||||||| ||||||||||||||||||||||| |||| ||||| |||
Sbjct: 370 ggcttgccaaggatccggacccggctgcgctgctgaaggtgaagggaatccagaaccgca 311
Query: 689 gacttgctatgttttccatgcttggtttcttcatccaagcttatgtgaccggagatggtc 748
||||||||||||||||||||| ||||| ||||||| ||| || |||||||||||||| |
Sbjct: 310 gacttgctatgttttccatgcctggttgtttcatcccagcctaagtgaccggagatgggc 251
Query: 749 ctgttgagaaccttgcaaaacatctcagtgacccttttggc-aacaacttgctca-cagt 806
|||||||||||||||| ||||||| |||||||||||||| || ||||||||| ||||
Sbjct: 250 ctgttgagaaccttgccctacatctccgtgacccttttggcttaccacttgctcaccagt 191
Query: 807 cattg-ccgggaatgctgagagagctccaactctgtg 842
| ||| ||||| ||| ||||||||| || ||||||||
Sbjct: 190 ccttgcccggggatggtgagagagcgcccactctgtg 154
>gnl|LJGI|AV429238 similar to UniRef100_Q8W537 Cluster: Chl a/b-binding protein; n=1;
Retama raetam|Rep: Chl a/b-binding protein - Retama
raetam, partial (70%)
Length = 400
Score = 333 bits (168), Expect = 1e-90
Identities = 281/311 (90%), Gaps = 6/311 (1%)
Strand = Plus / Plus
Query: 1 atggcttcccttggcatgtcagaaatgcttggaaacgccatcaacttcggtggcgccacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 atggcttcccttggcatgtcagaaatgcttggaaacgccatcaacttcggtggcgccacc 93
Query: 61 aggtcagcaccatctccctctagcccc-gccaccttcaagacagtggctcttttctccaa 119
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| | |
Sbjct: 94 aggtcagcaccatcntcctctagcccccgccacctt-aagacagtggctcttttcttcca 152
Query: 120 gaa-gaagccagcaccaaagcagaaacct-gttgctgttgctcctgctgacgaggaactc 177
||| ||||||| | ||||| ||||||||| || |||||||||| |||||||||||||||
Sbjct: 153 gaaagaagccacccccaaa-cagaaaccttgtggctgttgctc-tgctgacgaggaactt 210
Query: 178 gccaagtggtatggtcctgacagaaggatcttcttgcctgatggactcttggaccgatct 237
|| |||||||||||||||||| || | |||||| |||||||||||||||||||||||
Sbjct: 211 ccccagtggtatggtcctgacaaaaaggacttctttgctgatggactcttggaccgatct 270
Query: 238 gagatcccagagtacttgactggagaagtccccggagactatggttatgacccatttggt 297
||||| ||||||||||||||||||||| |||||||||||| | ||| |||||||||||
Sbjct: 271 gagataccagagtacttgactggagaaagtcccggagactattggtattacccatttggt 330
Query: 298 cttggcaagaa 308
||||| |||||
Sbjct: 331 cttgggaagaa 341
>gnl|LJGI|AV774664
Length = 387
Score = 309 bits (156), Expect = 2e-83
Identities = 218/236 (92%), Gaps = 2/236 (0%)
Strand = Plus / Minus
Query: 609 cggtccattcgacccgttggggcttgcaaaggatcc-ggaccaggctgcgctgctgaagg 667
|||||| || ||||| |||||| |||||||||||| ||||| |||||||||||||||||
Sbjct: 385 cggtccctttgaccccgtggggcgtgcaaaggatcccggacccggctgcgctgctgaagg 326
Query: 668 tgaaggaaatc-aagaacggcagacttgctatgttttccatgcttggtttcttcatccaa 726
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 tgaaggaaatccaagaacggcagacttgctatgttttccatgcttgggttcttcatccaa 266
Query: 727 gcttatgtgaccggagatggtcctgttgagaaccttgcaaaacatctcagtgaccctttt 786
|| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 265 gcgtatgtgaccggagatggtcctgttgagaaccttgccatacatatcagtgaccctttt 206
Query: 787 ggcaacaacttgctcacagtcattgccgggaatgctgagagagctccaactctgtg 842
||| || ||||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct: 205 ggctactacttgctcacagtcattcccgggaagggtgagagagctccaactctgtg 150
>gnl|LJGI|AV776165 similar to UniRef100_Q40039 Cluster: Precursor of CP29, core
chlorophyll a/b binding (CAB) protein of photosystem II;
n=1; Hordeum vulgare|Rep: Precursor of CP29, core
chlorophyll a/b binding (CAB) protein of photosystem II
- Hordeum vulgare (Barley), partial (20%)
Length = 366
Score = 289 bits (146), Expect = 1e-77
Identities = 232/254 (91%), Gaps = 5/254 (1%)
Strand = Plus / Minus
Query: 594 caagcttcatccaggcggtccatt-cgacccgttggggcttgca-aaggatccggaccag 651
||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||| |
Sbjct: 364 caagcttcatccaggcgtcccattgcgacccattggggcttgcccaaggatccggacccg 305
Query: 652 gctgcgctgctgaaggtgaaggaaatca-agaacggcagacttgctatgttttccatgct 710
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 304 gctgcgctgctgaaggtgaaggaaatcccagaacggcagacttgctatgttttccatgct 245
Query: 711 tggtttcttcatcca-agcttatgtgaccggagatggtcctgttgaga-accttgcaaaa 768
||||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 244 tggtttcttcatccacagcttatgtgaccggagatggtcctgttgagagaccggcccgaa 185
Query: 769 catctcagtgacccttttggcaacaacttgctcacagtcattgccgggaatgctgagaga 828
||||||||||||||||||||| || |||||||||| ||| || |||||||||||||||||
Sbjct: 184 catctcagtgacccttttggctactacttgctcaccgtcctttccgggaatgctgagaga 125
Query: 829 gctccaactctgtg 842
||||| ||||||||
Sbjct: 124 gctcccactctgtg 111
>gnl|LJGI|AV770443
Length = 314
Score = 52.0 bits (26), Expect = 6e-06
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Minus
Query: 776 gtgacccttttggcaacaacttgctcaca-gtcattg-ccgggaatgctgagagagctcc 833
|||||||||||||| || ||||||||||| |||| || ||||| ||||||||||||| ||
Sbjct: 223 gtgacccttttggctaccacttgctcacacgtcactgtccggggatgctgagagagcgcc 164
Query: 834 a-actctgtg 842
| ||||||||
Sbjct: 163 acactctgtg 154