Miyakogusa Predicted Gene
- Lj2g3v0486970.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0486970.1 Non Chatacterized Hit- tr|I1MQ84|I1MQ84_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26345
PE,88.52,0,MMS1_N,NULL; seg,NULL; CLEAVAGE AND POLYADENYLATION
SPECIFICITY FACTOR SUBUNIT 1 (CLEAVAGE AND POLYA,CUFF.34661.1
(3003 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS345956 similar to UniRef100_A7QGU1 Cluster: Chromosom... 1564 0.0
gnl|LJGI|TC66460 similar to UniRef100_Q9FGR0 Cluster: Probable c... 1041 0.0
>gnl|LJGI|FS345956 similar to UniRef100_A7QGU1 Cluster: Chromosome chr16 scaffold_94,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_94, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (17%)
Length = 789
Score = 1564 bits (789), Expect = 0.0
Identities = 789/789 (100%)
Strand = Plus / Minus
Query: 1178 gaagggttgtacagagacttgatctttccaagtcaaaagcttcagttctgtcatctggta 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaagggttgtacagagacttgatctttccaagtcaaaagcttcagttctgtcatctggta 730
Query: 1238 ttacgacaatcggaaattctctgttttttctcgccagtcgattaggagacagtatgctag 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttacgacaatcggaaattctctgttttttctcgccagtcgattaggagacagtatgctag 670
Query: 1298 tgcaattttcttgtggatcaagtgtttcaatgttgtcttccaatctaaaagaagaggtcg 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgcaattttcttgtggatcaagtgtttcaatgttgtcttccaatctaaaagaagaggtcg 610
Query: 1358 gtgatattgaaggagatgcttcttcaacaaagagattgcggaggtcaccttctgattctt 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtgatattgaaggagatgcttcttcaacaaagagattgcggaggtcaccttctgattctt 550
Query: 1418 tacatgatatggttagtggtgaggaactctccttgtatggatctgctccaaatagaacag 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacatgatatggttagtggtgaggaactctccttgtatggatctgctccaaatagaacag 490
Query: 1478 aatcagcacagaaatccttctcgtttgcagtaagggattcattgattaacattggtcctt 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aatcagcacagaaatccttctcgtttgcagtaagggattcattgattaacattggtcctt 430
Query: 1538 tgaaagatttctcatacggtttgagaataaatgctgatgcaaatgctacagggatagcca 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgaaagatttctcatacggtttgagaataaatgctgatgcaaatgctacagggatagcca 370
Query: 1598 agcagagtaactatgaattggtctgctgttctggtcatggaaagaatggttctctgtgtg 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agcagagtaactatgaattggtctgctgttctggtcatggaaagaatggttctctgtgtg 310
Query: 1658 ttcttcggcaatcaattcgcccagaagttattactgaggttgaacttcctgggtgcaaag 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttcttcggcaatcaattcgcccagaagttattactgaggttgaacttcctgggtgcaaag 250
Query: 1718 gaatttggactgtttatcataagagcgcacgctctcatatttccgattcttctaagctgg 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gaatttggactgtttatcataagagcgcacgctctcatatttccgattcttctaagctgg 190
Query: 1778 ccgatgatgatgatgagtatcatgcataccttattataagtttggaggctcgtactatgg 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ccgatgatgatgatgagtatcatgcataccttattataagtttggaggctcgtactatgg 130
Query: 1838 tactagaaacagccgatctgctaagtgaggttactgaaagtgttgactattatgttcaag 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tactagaaacagccgatctgctaagtgaggttactgaaagtgttgactattatgttcaag 70
Query: 1898 gaaaaacacttgcggcagggaatttattcggaaggcgtcgagttattcaagtgtatgaac 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gaaaaacacttgcggcagggaatttattcggaaggcgtcgagttattcaagtgtatgaac 10
Query: 1958 gtggtgctc 1966
|||||||||
Sbjct: 9 gtggtgctc 1
>gnl|LJGI|TC66460 similar to UniRef100_Q9FGR0 Cluster: Probable cleavage and
polyadenylation specificity factor subunit 1; n=1;
Arabidopsis thaliana|Rep: Probable cleavage and
polyadenylation specificity factor subunit 1 -
Arabidopsis thaliana (Mouse-ear cress), partial (13%)
Length = 827
Score = 1041 bits (525), Expect = 0.0
Identities = 525/525 (100%)
Strand = Plus / Plus
Query: 175 aacctcgtcgtcactgccgctaacgtcctcgaagtctacatcgtccgcctccaggaccgc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aacctcgtcgtcactgccgctaacgtcctcgaagtctacatcgtccgcctccaggaccgc 362
Query: 235 catccttcaaagccctcctccgcccgcggtacactcctcgatggaatctccggcgcctcg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 catccttcaaagccctcctccgcccgcggtacactcctcgatggaatctccggcgcctcg 422
Query: 295 cttgagctcgtttgccattacaggttgcatggaaatgttaaaagcatggctgtcttgagc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cttgagctcgtttgccattacaggttgcatggaaatgttaaaagcatggctgtcttgagc 482
Query: 355 attgggggtggtgatacttctaaaaggagagattctatcatcttaacttttaaagatgcg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attgggggtggtgatacttctaaaaggagagattctatcatcttaacttttaaagatgcg 542
Query: 415 aagatttcagttctagagtatgatgattctattcatggactccgaactagttctttgcat 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aagatttcagttctagagtatgatgattctattcatggactccgaactagttctttgcat 602
Query: 475 tgctttgagggtccagaatggctccatttaaaaagaggcagggaacaatttgcaagaggt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgctttgagggtccagaatggctccatttaaaaagaggcagggaacaatttgcaagaggt 662
Query: 535 ccagtggtaaaggttgatcctcaaggaaggtgtggtggagttctagtctacgatttgcaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ccagtggtaaaggttgatcctcaaggaaggtgtggtggagttctagtctacgatttgcaa 722
Query: 595 atgataatactaaagactactcaggctggttctggtttagttggggaggatgatccgttg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atgataatactaaagactactcaggctggttctggtttagttggggaggatgatccgttg 782
Query: 655 ggttctggaggtgcagttgctgctcgcattgactcatcttatatg 699
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ggttctggaggtgcagttgctgctcgcattgactcatcttatatg 827
Score = 216 bits (109), Expect = 6e-55
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 atgagtttcgcggcgtacaagatgatgcagtggcccaccggcgtcgaacactgcgcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atgagtttcgcggcgtacaagatgatgcagtggcccaccggcgtcgaacactgcgcctcc 188
Query: 61 ggcttcctcacccattcccgcgccgacctcgcttcccacaccatcattc 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ggcttcctcacccattcccgcgccgacctcgcttcccacaccatcattc 237