Miyakogusa Predicted Gene
- Lj2g3v0435440.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0435440.1 Non Chatacterized Hit- tr|I1NGP9|I1NGP9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.33371
PE,80.94,0,RRM_1,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; no descripti,CUFF.34828.1
(1143 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72764 similar to UniRef100_Q6R4Q7 Cluster: Splicing f... 1217 0.0
gnl|LJGI|TC58851 similar to UniRef100_Q6R4Q7 Cluster: Splicing f... 1108 0.0
gnl|LJGI|BW595142 weakly similar to UniRef100_A7PY01 Cluster: Ch... 208 6e-53
gnl|LJGI|FS323100 similar to UniRef100_Q6R4Q7 Cluster: Splicing ... 204 9e-52
gnl|LJGI|TC61003 similar to UniRef100_A7PY01 Cluster: Chromosome... 92 9e-18
gnl|LJGI|TC59976 similar to UniRef100_A7PY01 Cluster: Chromosome... 86 6e-16
>gnl|LJGI|TC72764 similar to UniRef100_Q6R4Q7 Cluster: Splicing factor-like protein;
n=1; Vitis riparia|Rep: Splicing factor-like protein -
Vitis riparia (Frost grape) (Vitis vulpina), partial
(41%)
Length = 846
Score = 1217 bits (614), Expect = 0.0
Identities = 614/614 (100%)
Strand = Plus / Plus
Query: 1 atgaggtctattttctgtggaaattttgaatatgatgcccggcagtcagagttggagcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 atgaggtctattttctgtggaaattttgaatatgatgcccggcagtcagagttggagcgg 292
Query: 61 ctttttagacgatatgggaaggttgatagggttgatatgaagtctggatttgcttttatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctttttagacgatatgggaaggttgatagggttgatatgaagtctggatttgcttttatc 352
Query: 121 tatatggaagatgagagagatgctgatgctgctattcgtgctcttgatcgggcagaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tatatggaagatgagagagatgctgatgctgctattcgtgctcttgatcgggcagaattt 412
Query: 181 ggtcggaaggggcggagacttcgtgtggaatggacaaagcatgagcgtggcatcagaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggtcggaaggggcggagacttcgtgtggaatggacaaagcatgagcgtggcatcagaaag 472
Query: 241 cctgctgctccaagaagatcatcagctactgcgaggccatcaaagactttattcgtgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cctgctgctccaagaagatcatcagctactgcgaggccatcaaagactttattcgtgatt 532
Query: 301 aattttgatacattccatacaagaacaagggacttggagagacactttgaaccgtatggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aattttgatacattccatacaagaacaagggacttggagagacactttgaaccgtatggg 592
Query: 361 aagatagccagtgtgaggatcagaaggaattttgcttttgttcagtatgaatcagaggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aagatagccagtgtgaggatcagaaggaattttgcttttgttcagtatgaatcagaggat 652
Query: 421 gatgcttgtaaagcactggaagccacaaataatagcaagttattggaccgggttatttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gatgcttgtaaagcactggaagccacaaataatagcaagttattggaccgggttatttct 712
Query: 481 gttgaatttgctgctaaagatgatgatgataggagaaatggatatagcccagagagaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gttgaatttgctgctaaagatgatgatgataggagaaatggatatagcccagagagaggc 772
Query: 541 catgataatcgtcatgataggagccgtgatggaaggcgatcacctagtccttatcgcaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 catgataatcgtcatgataggagccgtgatggaaggcgatcacctagtccttatcgcaga 832
Query: 601 gaaaggggtagtcc 614
||||||||||||||
Sbjct: 833 gaaaggggtagtcc 846
>gnl|LJGI|TC58851 similar to UniRef100_Q6R4Q7 Cluster: Splicing factor-like protein;
n=1; Vitis riparia|Rep: Splicing factor-like protein -
Vitis riparia (Frost grape) (Vitis vulpina), partial
(18%)
Length = 860
Score = 1108 bits (559), Expect = 0.0
Identities = 562/563 (99%)
Strand = Plus / Plus
Query: 581 cacctagtccttatcgcagagaaaggggtagtcctgattatggtcgtggggccagtcctt 640
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2 cacctagtccttatcgcagagaaaggggtagtcctgattatggtcgtgggaccagtcctt 61
Query: 641 acaagagggagaggagcagccctgactatggccatggccgcagccgtagtagaagccccc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 acaagagggagaggagcagccctgactatggccatggccgcagccgtagtagaagccccc 121
Query: 701 accgcagagtgcgagctagccctgctcacgggcgtagaagccctagtccatatagaagag 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 accgcagagtgcgagctagccctgctcacgggcgtagaagccctagtccatatagaagag 181
Query: 761 agagggatggctctgatcttgttcgtgactccagccgcagtccttttcacaaagagcgag 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agagggatggctctgatcttgttcgtgactccagccgcagtccttttcacaaagagcgag 241
Query: 821 ggagaaccgatcggtcttcctcccttagtcccaaaagaagagggaggacaagccctcaaa 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggagaaccgatcggtcttcctcccttagtcccaaaagaagagggaggacaagccctcaaa 301
Query: 881 atggtggtgactctagccgtagtccttatgatcctgtgaaggctactagccctgaaaatg 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atggtggtgactctagccgtagtccttatgatcctgtgaaggctactagccctgaaaatg 361
Query: 941 gcgagatcaaacatagtcctgatgcaagagggaatcccagcgattacaatggatatggag 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcgagatcaaacatagtcctgatgcaagagggaatcccagcgattacaatggatatggag 421
Query: 1001 gagggagcccagataatatgcgtgagcctgaacctgagcctgaggccgagcctgagccca 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagggagcccagataatatgcgtgagcctgaacctgagcctgaggccgagcctgagccca 481
Query: 1061 gggacagtcccaactatggtggtcctgaaagtcccatgcatgaacgataccgcagccagt 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gggacagtcccaactatggtggtcctgaaagtcccatgcatgaacgataccgcagccagt 541
Query: 1121 caccccctgcagaagaatgatct 1143
|||||||||||||||||||||||
Sbjct: 542 caccccctgcagaagaatgatct 564
>gnl|LJGI|BW595142 weakly similar to UniRef100_A7PY01 Cluster: Chromosome chr15
scaffold_37, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (15%)
Length = 142
Score = 208 bits (105), Expect = 6e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 216 aaagcatgagcgtggcatcagaaagcctgctgctccaagaagatcatcagctactgcgag 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aaagcatgagcgtggcatcagaaagcctgctgctccaagaagatcatcagctactgcgag 65
Query: 276 gccatcaaagactttattcgtgattaattttgatacattccatac 320
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gccatcaaagactttattcgtgattaattttgatacattccatac 110
>gnl|LJGI|FS323100 similar to UniRef100_Q6R4Q7 Cluster: Splicing factor-like protein;
n=1; Vitis riparia|Rep: Splicing factor-like protein -
Vitis riparia (Frost grape) (Vitis vulpina), partial
(8%)
Length = 557
Score = 204 bits (103), Expect = 9e-52
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 1 atgaggtctattttctgtggaaattttgaatatgatgcccggcagtcagagttggagcgg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 atgaggtctattttctgtgaaaattttgaatatgatgcccggcagtcagagttggagcgg 151
Query: 61 ctttttagacgatatgggaaggttgatagggttgatatgaagtctgg 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ctttttagacgatatgggaaggttgatagggttgatatgaagtctgg 198
>gnl|LJGI|TC61003 similar to UniRef100_A7PY01 Cluster: Chromosome chr15 scaffold_37,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_37, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (95%)
Length = 1115
Score = 91.7 bits (46), Expect = 9e-18
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 316 catacaagaacaagggacttggagagacactttgaaccgtatgggaagatagccagtgtg 375
||||| || |||||||| |||||||||||||||| || |||||||| ||| | | | |
Sbjct: 481 cataccaggacaagggatctggagagacactttgatccctatgggaaaatatcaaatata 540
Query: 376 aggatcagaaggaattttgcttttgttcagtatgaatc 413
|||||||||||||||||||||||| |||||||||||||
Sbjct: 541 aggatcagaaggaattttgcttttattcagtatgaatc 578
Score = 58.0 bits (29), Expect = 1e-07
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 71 gatatgggaaggttgatagggttgatatgaagtctggatttgcttttatctatatggaag 130
|||| |||||||| || || || || ||||||||||||||||||||| |||| |||||||
Sbjct: 236 gatacgggaaggtcgaaagagtggacatgaagtctggatttgcttttgtctacatggaag 295
Query: 131 a 131
|
Sbjct: 296 a 296
>gnl|LJGI|TC59976 similar to UniRef100_A7PY01 Cluster: Chromosome chr15 scaffold_37,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_37, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (93%)
Length = 1278
Score = 85.7 bits (43), Expect = 6e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 335 tggagagacactttgaaccgtatgggaagatagccagtgtgaggatcagaaggaattttg 394
|||||||||||||||| || |||||||| ||| | | | | |||||||||||||||||||
Sbjct: 714 tggagagacactttgatccctatgggaaaatatcaaatataaggatcagaaggaattttg 773
Query: 395 cttttgttcagtatgaatc 413
||||| |||||||||||||
Sbjct: 774 cttttattcagtatgaatc 792