Miyakogusa Predicted Gene
- Lj2g3v0193170.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0193170.1 tr|Q6IDC0|Q6IDC0_ARATH At3g45900 OS=Arabidopsis
thaliana GN=At3g45900 PE=2 SV=1,35.09,7e-18,coiled-coil,NULL; GB DEF:
EMB|CAB82814.1,NULL; RIBONUCLEASE P PROTEIN SUBUNIT
P38-RELATED,NULL,gene.g38592.t1.1
(1245 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68240 similar to UniRef100_A7QF25 Cluster: Chromosome... 1205 0.0
gnl|LJGI|BP062903 88 2e-16
gnl|LJGI|BP074960 68 1e-10
>gnl|LJGI|TC68240 similar to UniRef100_A7QF25 Cluster: Chromosome chr16 scaffold_86,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_86, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 612
Score = 1205 bits (608), Expect = 0.0
Identities = 611/612 (99%)
Strand = Plus / Plus
Query: 172 ctggttaaggatgtaaaacagttaagacatgacaagatgaagttggagagcttaatgttc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggttaaggatgtaaaacagttaagacatgacaagatgaagttggagagcttaatgttc 60
Query: 232 gagaaagaagatgaactcgcttccttgaaggagcaagttgcatcaaaattgaggcccttg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagaaagaagatgaactcgcttccttgaaggagcaagttgcatcaaaattgaggcccttg 120
Query: 292 aactgctttagaaataactcaaatttgcttcaacaatcttcagaactagcccaagatgct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aactgctttagaaataactcaaatttgcttcaacaatcttcagaactagcccaagatgct 180
Query: 352 gtctggtctggagtcaaggttatcaagaaaaaaccgggagaaaaggagatacaaatgatg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtctggtctggagtcaaggttatcaagaaaaaaccgggagaaaaggagatacaaatgatg 240
Query: 412 gaaaccttgattgaggaagattgtgaaaaggaagcacagcacctgccacatgatgaattt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaccttgattgaggaagattgtgaaaaggaagcacagcacctgccacatgatgaattt 300
Query: 472 aacaatgttgatttactagctcaatctccagaaaataatgttgaagaagaaaaagatgtt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacaatgttgatttactagctcaatctccagaaaataatgttgaagaagaaaaagatgtt 360
Query: 532 cctagggaggatagtcctattcctatccaaaatctacgtccaaatcaagtacaagttgtt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctagggaggatagtcctattcctatccaaaatctacgtccaaatcaagtacaagttgtt 420
Query: 592 gatgctgctgaaaagataggatctactacctgcacttcctttaataagacaaaacagtct 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgctgctgaaaagataggatctactacctgcacttcctttaataagacaaaacagtct 480
Query: 652 ccatggaaaatggatcttcatgctcttggggtatcttacaagatcaagaggctgaagcag 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccatggaaaatggatcttcatgctcttggggtatcttacaagatcaagaggctgaagcag 540
Query: 712 cagcttgtacttgttgaaaggttgacaggaatgcaaagcaatggtgaaaactcagaaatc 771
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 541 cagcttgtacttgttgaaaggttgacaggaattcaaagcaatggtgaaaactcagaaatc 600
Query: 772 agtgatgatagc 783
||||||||||||
Sbjct: 601 agtgatgatagc 612
>gnl|LJGI|BP062903
Length = 554
Score = 87.7 bits (44), Expect = 2e-16
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 914 ttggagaaatgaatggtgcaagagcaaaggagaaaacatcaaca-ctggagcacttctta 972
||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||
Sbjct: 554 ttggagaaatgaatggtgcaagacccaaggagaaaacatccacacctggagcacttctta 495
Query: 973 gagg 976
||||
Sbjct: 494 gagg 491
>gnl|LJGI|BP074960
Length = 439
Score = 67.9 bits (34), Expect = 1e-10
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1212 agctcgtgaaggaatgatatgtttgagaaggtag 1245
||||||||||||||||||||||||||||||||||
Sbjct: 439 agctcgtgaaggaatgatatgtttgagaaggtag 406