Miyakogusa Predicted Gene
- Lj2g3v0156840.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0156840.1 tr|G7LAL7|G7LAL7_MEDTR 40S ribosomal protein S2
OS=Medicago truncatula GN=MTR_8g105340 PE=3 SV=1,97.03,0,seg,NULL;
RIBOSOMAL_S5,Ribosomal protein S5, N-terminal, conserved site;
Ribosomal_S5,Ribosomal prot,CUFF.34330.1
(966 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC80759 homologue to UniRef100_A7PWE1 Cluster: Chromoso... 1772 0.0
gnl|LJGI|TC71585 homologue to UniRef100_A7PWE1 Cluster: Chromoso... 708 0.0
gnl|LJGI|AV770199 homologue to UniRef100_Q0D7V1 Cluster: Os07g02... 299 2e-80
gnl|LJGI|AV417915 homologue to UniRef100_P49688 Cluster: 40S rib... 244 9e-64
gnl|LJGI|BW621088 similar to UniRef100_A7PWE1 Cluster: Chromosom... 141 9e-33
gnl|LJGI|AV773350 UniRef100_P49688 Cluster: 40S ribosomal protei... 101 8e-21
>gnl|LJGI|TC80759 homologue to UniRef100_A7PWE1 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (85%)
Length = 1065
Score = 1772 bits (894), Expect = 0.0
Identities = 894/894 (100%)
Strand = Plus / Plus
Query: 73 ctgcattttagggtttcctttctctcagcgccgcactctctattcacagcatcaatggcg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcattttagggtttcctttctctcagcgccgcactctctattcacagcatcaatggcg 60
Query: 133 gaacgcggtggaggcgaacgcggcggaggcgatcgcggtggcttcggacgaggcttcggt 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaacgcggtggaggcgaacgcggcggaggcgatcgcggtggcttcggacgaggcttcggt 120
Query: 193 ggccgaggacgcggcggtgacaggggccgcggaggccgtagaagaggcgcaggccgccgc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggccgaggacgcggcggtgacaggggccgcggaggccgtagaagaggcgcaggccgccgc 180
Query: 253 gatgaggaggagaagtgggttccagtgacgaaactcggtcgtctagtgagggatgggaaa 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatgaggaggagaagtgggttccagtgacgaaactcggtcgtctagtgagggatgggaaa 240
Query: 313 atccgcagcttggagcagatctaccttcactctctccccatcaaggagcaccagatcatc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atccgcagcttggagcagatctaccttcactctctccccatcaaggagcaccagatcatc 300
Query: 373 gacaccctcgtgggacccacgctcaaggacgaggtgatgaagatcatgccggtccagaag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gacaccctcgtgggacccacgctcaaggacgaggtgatgaagatcatgccggtccagaag 360
Query: 433 caaacccgggccggtcagcgaacccggttcaaggctttcgtcgtcgtcggagacaacaac 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaacccgggccggtcagcgaacccggttcaaggctttcgtcgtcgtcggagacaacaac 420
Query: 493 ggccacgtcggtctcggcgtgaagtgcagcaaggaagtcgccaccgccatccgcggcggc 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggccacgtcggtctcggcgtgaagtgcagcaaggaagtcgccaccgccatccgcggcggc 480
Query: 553 atcatactggcgaagctttccgtgatccccgtcaggagggggtactgggggaacaagatt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atcatactggcgaagctttccgtgatccccgtcaggagggggtactgggggaacaagatt 540
Query: 613 gggaagcctcacactgttccgtgcaaggtgacagggaagtgcggttctgtcaccgtcaga 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gggaagcctcacactgttccgtgcaaggtgacagggaagtgcggttctgtcaccgtcaga 600
Query: 673 atggttccggcacctcgtggttctggaattgtggctgctagggttcccaagaaggtgctg 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atggttccggcacctcgtggttctggaattgtggctgctagggttcccaagaaggtgctg 660
Query: 733 cagttcgctgggattgatgatgtcttcacttcttcccgaggatccaccaagacactcggc 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cagttcgctgggattgatgatgtcttcacttcttcccgaggatccaccaagacactcggc 720
Query: 793 aatttcgttaaggcaacttttgactgtttgctgaaaacctatggtttcctgacacctgaa 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aatttcgttaaggcaacttttgactgtttgctgaaaacctatggtttcctgacacctgaa 780
Query: 853 ttctggaaggagactcgcttcaccaaatctccattccaagagtacacagatctgttggct 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttctggaaggagactcgcttcaccaaatctccattccaagagtacacagatctgttggct 840
Query: 913 aagccaactgcaaaggctctaatcttggaggaggaaagggtggatgcttgagtt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aagccaactgcaaaggctctaatcttggaggaggaaagggtggatgcttgagtt 894
>gnl|LJGI|TC71585 homologue to UniRef100_A7PWE1 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (82%)
Length = 1151
Score = 708 bits (357), Expect = 0.0
Identities = 627/717 (87%)
Strand = Plus / Plus
Query: 250 cgcgatgaggaggagaagtgggttccagtgacgaaactcggtcgtctagtgagggatggg 309
||||| ||||||||||||||||| || ||||| || || |||||||| || || || ||
Sbjct: 186 cgcgacgaggaggagaagtgggtccccgtgaccaagctaggtcgtcttgtcagagacggc 245
Query: 310 aaaatccgcagcttggagcagatctaccttcactctctccccatcaaggagcaccagatc 369
|||||||| ||| |||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 246 aaaatccgaagcctggagcagatctacctccactccctcccaatcaaggagcaccagatc 305
Query: 370 atcgacaccctcgtgggacccacgctcaaggacgaggtgatgaagatcatgccggtccag 429
||||||| | || |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 306 atcgacatgttggttggacccactctcaaggacgaggtcatgaagatcatgccggtccag 365
Query: 430 aagcaaacccgggccggtcagcgaacccggttcaaggctttcgtcgtcgtcggagacaac 489
||||| ||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 366 aagcagacccgtgccggtcagcgaaccaggttcaaggccttcgtcgtcgtcggcgacaac 425
Query: 490 aacggccacgtcggtctcggcgtgaagtgcagcaaggaagtcgccaccgccatccgcggc 549
|| || |||||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 426 aatggtcacgtcgggctcggcgtgaagtgcagcaaggaagttgctaccgccattcgcggt 485
Query: 550 ggcatcatactggcgaagctttccgtgatccccgtcaggagggggtactgggggaacaag 609
|| || || || || ||||| || || ||||||||||||||||| |||||||| ||||||
Sbjct: 486 gggattatccttgctaagctctctgttatccccgtcaggaggggatactggggtaacaag 545
Query: 610 attgggaagcctcacactgttccgtgcaaggtgacagggaagtgcggttctgtcaccgtc 669
|| || ||||| ||||| ||||| |||||||| || || ||||| ||||| ||||| |||
Sbjct: 546 atcggaaagccccacaccgttccctgcaaggttaccggaaagtgtggttccgtcactgtc 605
Query: 670 agaatggttccggcacctcgtggttctggaattgtggctgctagggttcccaagaaggtg 729
| ||||| || || ||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 606 cgcatggtccctgctcctcgtggttctggaatcgttgctgctagggttcccaagaaggtc 665
Query: 730 ctgcagttcgctgggattgatgatgtcttcacttcttcccgaggatccaccaagacactc 789
||||||||||||||||||||||||| |||||||| ||| | || |||||||| || ||
Sbjct: 666 ttgcagttcgctgggattgatgatgttttcacttcctccaggggttccaccaaaaccctt 725
Query: 790 ggcaatttcgttaaggcaacttttgactgtttgctgaaaacctatggtttcctgacacct 849
|| |||||||| ||||| |||||||| ||| ||||||| ||||||||||| |||||||||
Sbjct: 726 ggaaatttcgtcaaggctacttttgattgtctgctgaagacctatggttttctgacacct 785
Query: 850 gaattctggaaggagactcgcttcaccaaatctccattccaagagtacacagatctgttg 909
|||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 786 gaattctggaaggagactcgtttcaccaaatctccattccaagagtataccgatcttttg 845
Query: 910 gctaagccaactgcaaaggctctaatcttggaggaggaaagggtggatgcttgagtt 966
||||||||||| |||||||| || ||| | ||||||||||||||||| |||||||||
Sbjct: 846 gctaagccaacagcaaaggcccttatccttgaggaggaaagggtggaggcttgagtt 902
>gnl|LJGI|AV770199 homologue to UniRef100_Q0D7V1 Cluster: Os07g0207400 protein; n=2;
Oryza sativa Japonica Group|Rep: Os07g0207400 protein -
Oryza sativa subsp. japonica (Rice), partial (60%)
Length = 563
Score = 299 bits (151), Expect = 2e-80
Identities = 300/347 (86%), Gaps = 2/347 (0%)
Strand = Plus / Minus
Query: 622 cacactgttccgtgcaaggtgacagggaagtgcggttctgtcaccgtcagaatggttccg 681
||||| ||||| |||||||| || || ||||| ||||| ||||| ||| | ||||| ||
Sbjct: 559 cacaccgttccctgcaaggttaccggaaagtgtggttccgtcactgtccgcatggtccct 500
Query: 682 gcacctcgtggttctggaattgtggctgctagggttcccaagaaggtgctgcagttcgct 741
|| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 499 gctcctcgtggttctggaatcgttgctgctagggttcccaagaaggtcttgcagttcgct 440
Query: 742 gggattgatgatgtcttcacttcttcccgaggatccaccaagacactcggcaatttcgtt 801
|||||||||||||| |||||||| ||| | || |||||| | || || || ||||||||
Sbjct: 439 gggattgatgatgttttcacttcctccaggggttccacccaaacccttggaaatttcgtc 380
Query: 802 aaggcaacttttgactgtttg-ctgaaaacctatggtttcctgacacctga-attctgga 859
||||| |||||||| ||| || ||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 379 aaggctacttttgattgtctgtctgaagacctatggttttctgacacctgacattctgga 320
Query: 860 aggagactcgcttcaccaaatctccattccaagagtacacagatctgttggctaagccaa 919
|||||||||| |||||| ||||||||||||||||||| || ||||| |||||||||||||
Sbjct: 319 aggagactcgtttcacctaatctccattccaagagtataccgatcttttggctaagccaa 260
Query: 920 ctgcaaaggctctaatcttggaggaggaaagggtggatgcttgagtt 966
| || ||||| || ||| | ||||||||||||||||| |||||||||
Sbjct: 259 cagccaaggcccttatccttgaggaggaaagggtggaggcttgagtt 213
>gnl|LJGI|AV417915 homologue to UniRef100_P49688 Cluster: 40S ribosomal protein S2-3;
n=1; Arabidopsis thaliana|Rep: 40S ribosomal protein
S2-3 - Arabidopsis thaliana (Mouse-ear cress), partial
(23%)
Length = 303
Score = 244 bits (123), Expect = 9e-64
Identities = 174/191 (91%)
Strand = Plus / Plus
Query: 340 cactctctccccatcaaggagcaccagatcatcgacaccctcgtgggacccacgctcaag 399
||||| ||||| ||||||||||||||||||||||||| | || |||||||| ||||||
Sbjct: 110 cactccctcccaatcaaggagcaccagatcatcgacatgttggttggacccactctcaag 169
Query: 400 gacgaggtgatgaagatcatgccggtccagaagcaaacccgggccggtcagcgaacccgg 459
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct: 170 gacgaggtcatgaagatcatgccggtccagaagcagacccgtgccggtcagcgaaccagg 229
Query: 460 ttcaaggctttcgtcgtcgtcggagacaacaacggccacgtcggtctcggcgtgaagtgc 519
|||||||| |||||||||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 230 ttcaaggccttcgtcgtcgtcggcgacaacaatggtcacgtcgggctcggcgtgaagtgc 289
Query: 520 agcaaggaagt 530
|||||||||||
Sbjct: 290 agcaaggaagt 300
>gnl|LJGI|BW621088 similar to UniRef100_A7PWE1 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 333
Score = 141 bits (71), Expect = 9e-33
Identities = 113/127 (88%)
Strand = Plus / Plus
Query: 250 cgcgatgaggaggagaagtgggttccagtgacgaaactcggtcgtctagtgagggatggg 309
||||| ||||||||||||||||| || ||||| || ||||||||||| ||||| || ||
Sbjct: 194 cgcgacgaggaggagaagtgggtccccgtgaccaagctcggtcgtcttgtgagagacggc 253
Query: 310 aaaatccgcagcttggagcagatctaccttcactctctccccatcaaggagcaccagatc 369
|||||||| ||| |||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 254 aaaatccgaagcctggagcagatctacctccactccctcccaatcaaggagcaccagatc 313
Query: 370 atcgaca 376
|||||||
Sbjct: 314 atcgaca 320
>gnl|LJGI|AV773350 UniRef100_P49688 Cluster: 40S ribosomal protein S2-3; n=1;
Arabidopsis thaliana|Rep: 40S ribosomal protein S2-3 -
Arabidopsis thaliana (Mouse-ear cress), partial (8%)
Length = 502
Score = 101 bits (51), Expect = 8e-21
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 694 tctggaattgtggctgctagggttcccaagaaggtgctgcagttcgctgggattgatgat 753
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 tctggaatcgttgctgctagggttcccaagaaggtcttgcagttcgctgggattgatgat 443
Query: 754 gtcttcacttc 764
|| ||||||||
Sbjct: 442 gttttcacttc 432