Miyakogusa Predicted Gene

Lj2g3v0092560.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0092560.1 tr|Q6R2U8|Q6R2U8_BRACM Reduced vernalization
response 1 OS=Brassica campestris PE=2 SV=1,24.92,2e-18,B3,B3 DNA
binding domain; no description,DNA-binding pseudobarrel domain;
DNA-binding pseudobarrel d,gene.g38393.t1.1
         (1176 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC596542 weakly similar to UniRef100_A2Q2N6 Cluster: Tr...   214   9e-55
gnl|LJGI|TC82071 weakly similar to UniRef100_A2Q2N6 Cluster: Tra...   125   7e-28

>gnl|LJGI|DC596542 weakly similar to UniRef100_A2Q2N6 Cluster: Transcriptional factor
           B3; n=1; Medicago truncatula|Rep: Transcriptional factor
           B3 - Medicago truncatula (Barrel medic), partial (20%)
          Length = 409

 Score =  214 bits (108), Expect = 9e-55
 Identities = 168/188 (89%)
 Strand = Plus / Plus

                                                                       
Query: 5   caaacccggtaattctcaagcctccagatgacactaaatgggagatacattggagcaaac 64
           ||||||| |||||||||||||| || ||| ||||||  ||||||||||||||||| ||||
Sbjct: 220 caaacccagtaattctcaagccccctgataacactagttgggagatacattggagtaaac 279

                                                                       
Query: 65  atgattctgagatttggtttcaaaagggtttgaaagaattcgcgaaatattactccctgg 124
           |||||||||| ||||||||||||||||||| | ||||||| |||||||||||||||||  
Sbjct: 280 atgattctgatatttggtttcaaaagggttgggaagaatttgcgaaatattactccctct 339

                                                                       
Query: 125 atcatgggcacttggtgttgtttgaattcaaggatgcctctaattttgaggtgcgtatat 184
           | |||||||||||||| |||||||||||||||||||| ||| |||||| ||||| |||||
Sbjct: 340 accatgggcacttggttttgtttgaattcaaggatgcttctcattttggggtgcatatat 399

                   
Query: 185 ttggcaag 192
           ||| ||||
Sbjct: 400 ttgacaag 407


>gnl|LJGI|TC82071 weakly similar to UniRef100_A2Q2N6 Cluster: Transcriptional factor
           B3; n=1; Medicago truncatula|Rep: Transcriptional factor
           B3 - Medicago truncatula (Barrel medic), partial (24%)
          Length = 744

 Score =  125 bits (63), Expect = 7e-28
 Identities = 210/256 (82%), Gaps = 6/256 (2%)
 Strand = Plus / Plus

                                                                       
Query: 77  tttggtttcaaaagggtttgaaagaattcgcgaaatattactccctggatcatgggcact 136
           ||||||||||||| |||| |||||| || ||||||||||||||||| ||||| || ||| 
Sbjct: 275 tttggtttcaaaatggttggaaagattttgcgaaatattactccctcgatcacggacaca 334

                                                                       
Query: 137 tggtgttgtttgaattcaaggatgcctctaattttgaggtgcgtatatttggcaagggca 196
           ||||||||||||||| ||||||| | ||| |||||| ||| | ||||||||  ||| |||
Sbjct: 335 tggtgttgtttgaatacaaggattcttctcattttggggtacatatatttgataagagca 394

                                                                       
Query: 197 cccttgaaatagaatatcctatgatccatggcaatcaagatgaacagaacaacaaccttg 256
           |||||||||||  ||||||| | |  ||||  |||||||||||| ||    |||||| ||
Sbjct: 395 cccttgaaataagatatcct-tca--catgagaatcaagatgaagag---cacaaccctg 448

                                                                       
Query: 257 atcagatgagtgacaactcagttgaaattttggatgagctacctccatgcaagaagacta 316
           |||||||   |||  |||| ||||| || |||||| || ||||||| |||||||||||||
Sbjct: 449 atcagattgatgatgactctgttgagatattggataagatacctccttgcaagaagacta 508

                           
Query: 317 ggctaaaatcaccaat 332
             || |||||||||||
Sbjct: 509 aactgaaatcaccaat 524