Miyakogusa Predicted Gene

Lj2g3v0065000.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0065000.1 Non Chatacterized Hit- tr|D5ACI0|D5ACI0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,56.03,5e-19,seg,NULL,gene.g38352.t1.1
         (369 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC69475 similar to UniRef100_A7QNL8 Cluster: Chromosome...   103   7e-22
gnl|LJGI|GO019054 similar to UniRef100_A7QNL8 Cluster: Chromosom...   100   1e-20

>gnl|LJGI|TC69475 similar to UniRef100_A7QNL8 Cluster: Chromosome undetermined
           scaffold_133, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (79%)
          Length = 1444

 Score =  103 bits (52), Expect = 7e-22
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaataaagatagaaggcgatcgagcatacacgatatcacaagtgtgaacaatggtgat 60
           ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| || 
Sbjct: 842 atgaataaagatagaaggcgatccagtatacatgatatcaccagtgtgaacaatggagac 901

                                           
Query: 61  attgcagcacctcaaggacccataaccggtca 92
           ||| |||| ||||||||||| ||||| |||||
Sbjct: 902 atttcagctcctcaaggaccaataactggtca 933


>gnl|LJGI|GO019054 similar to UniRef100_A7QNL8 Cluster: Chromosome undetermined
           scaffold_133, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (48%)
          Length = 626

 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaataaagatagaaggcgatcgagcatacacgatatcacaagtgtgaacaatggtgat 60
           ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| || 
Sbjct: 290 atgaataaagatagaaggcgatccagtatacatgatatcaccagtgtgaacaatggagac 349

                                     
Query: 61  attgcagcacctcaaggacccataac 86
           ||| |||| ||||||||||| |||||
Sbjct: 350 atttcagctcctcaaggaccaataac 375