Miyakogusa Predicted Gene

Lj2g3v0044990.3
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0044990.3 Non Chatacterized Hit- tr|I1HM45|I1HM45_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,67.69,3e-19,SNF5,SNF5/SMARCB1/INI1,CUFF.34158.3
         (246 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57219 homologue to UniRef100_A5X538 Cluster: SNF5; n=...   359   5e-99

>gnl|LJGI|TC57219 homologue to UniRef100_A5X538 Cluster: SNF5; n=1; Pisum
           sativum|Rep: SNF5 - Pisum sativum (Garden pea), complete
          Length = 1096

 Score =  359 bits (181), Expect = 5e-99
 Identities = 232/248 (93%), Gaps = 2/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaaacccccgcttcagttttctacagaaaccccgtgaagttcagaatgccaacagcg 60
           |||||| |||| |||||| |||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 95  atgaaagccccagcttcaattttctacagaaaccctgtgaaattcagaatgccaacggcg 154

                                                                       
Query: 61  gagaatctggtcccaattcgattggacattgaaatcgacgctaagaggtacaaagatgcc 120
           ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 155 gagaatctggtaccaattcgattggacattgaaatcgacgctcagaggtacaaagatgcc 214

                                                                       
Query: 121 ttcacatggaacccttccgatcctgatcacgaggtgggtgtctttgcaagacgtactgtt 180
           |||||||||||||||||||||||||||  |||||| ||||||||||||| ||| ||||||
Sbjct: 215 ttcacatggaacccttccgatcctgatagcgaggttggtgtctttgcaaaacggactgtt 274

                                                                       
Query: 181 aaagacctaaagcttcctcctccttttgttactcagattgctcaatcaatt--gtcacag 238
           |||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||
Sbjct: 275 aaagacctaaagcttcctcctccttttgttactcagattgctcagtcaattcagtcacag 334

                   
Query: 239 ctagctga 246
           ||||||||
Sbjct: 335 ctagctga 342