Miyakogusa Predicted Gene

Lj2g3v0044990.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj2g3v0044990.2 tr|E5GC48|E5GC48_CUCME SNF5-like protein BSH
OS=Cucumis melo subsp. melo PE=4
SV=1,74.55,1e-18,SNF5,SNF5/SMARCB1/INI1; Peptidase_C48,Peptidase C48,
SUMO/Sentrin/Ubl1,CUFF.34158.2
         (318 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57219 homologue to UniRef100_A5X538 Cluster: SNF5; n=...   280   5e-75
gnl|LJGI|TC82516 similar to UniRef100_Q8QQ03 Cluster: CMP190.5bL...   168   1e-41
gnl|LJGI|BP034215 similar to UniRef100_Q39009 Cluster: Meiotic r...   153   8e-37
gnl|LJGI|TC81486                                                      143   7e-34
gnl|LJGI|BP075152 similar to UniRef100_A5X538 Cluster: SNF5; n=1...    54   5e-07

>gnl|LJGI|TC57219 homologue to UniRef100_A5X538 Cluster: SNF5; n=1; Pisum
           sativum|Rep: SNF5 - Pisum sativum (Garden pea), complete
          Length = 1096

 Score =  280 bits (141), Expect = 5e-75
 Identities = 159/165 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtatgctggagagaaaattattcccatcaagcttgatctttgtgtaaatcatatgctg 60
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct: 368 atgtatgctggagagaaaattgttcccatcaagcttgatcttcgtgtaaatcatacgctg 427

                                                                       
Query: 61  gtaaaggaccagtttctatgggacttgaacaactttgagagtgatcctgaagagttagct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 428 gtaaaggaccagtttctatgggacttgaacaactttgagagtgatcctgaagagtttgcg 487

                                                        
Query: 121 agaatcttctgcaaagacatgggtattgaggatcctgaagttggg 165
           |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 488 agaatcttctgcaaagacatgggtattgaggatcctgaggttggg 532


>gnl|LJGI|TC82516 similar to UniRef100_Q8QQ03 Cluster: CMP190.5bL; n=1; Camelpox
           virus CMS|Rep: CMP190.5bL - Camelpox virus (strain CMS),
           partial (15%)
          Length = 1029

 Score =  168 bits (85), Expect = 1e-41
 Identities = 135/151 (89%), Gaps = 1/151 (0%)
 Strand = Plus / Plus

                                                                       
Query: 168 ccctcgtcagactaatagtgttgattgcggatattatgtgataaagttcatgaaagatat 227
           |||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct: 122 cccttgtcagactaatagtgttgattgtggatattatgtgatgaagttaatgaaagatat 181

                                                                       
Query: 228 catcactcaccaacaacttgtgatcccaacgaaagtaagaaactttgatatgcgttcgca 287
           ||| |||||||| ||||||||||| || | ||  ||||||||||||||| |||||| |||
Sbjct: 182 cattactcaccatcaacttgtgat-ccnatgagggtaagaaactttgatctgcgtttgca 240

                                          
Query: 288 ttggattttaaaagctctaattgtaacttaa 318
           |||||||||||||||||  ||||| ||||||
Sbjct: 241 ttggattttaaaagctccnattgttacttaa 271


>gnl|LJGI|BP034215 similar to UniRef100_Q39009 Cluster: Meiotic recombination protein
           DMC1 homolog; n=1; Arabidopsis thaliana|Rep: Meiotic
           recombination protein DMC1 homolog - Arabidopsis
           thaliana (Mouse-ear cress), partial (8%)
          Length = 502

 Score =  153 bits (77), Expect = 8e-37
 Identities = 92/97 (94%)
 Strand = Plus / Minus

                                                                       
Query: 165 gtgccctcgtcagactaatagtgttgattgcggatattatgtgataaagttcatgaaaga 224
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 308 gtgccctcgtcagactaatagtgttgattgcggatattacgtgatgaagttcatgaaaga 249

                                                
Query: 225 tatcatcactcaccaacaacttgtgatcccaacgaaa 261
           |||||||||||||| || |||||||||||| ||||||
Sbjct: 248 tatcatcactcacccaccacttgtgatccccacgaaa 212


>gnl|LJGI|TC81486 
          Length = 601

 Score =  143 bits (72), Expect = 7e-34
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                       
Query: 165 gtgccctcgtcagactaatagtgttgattgcggatattatgtgataaagttcatgaaaga 224
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 100 gtgccctcgtcagactaatagtgttgattgcggatattatgtgatgaagttcatgaaaga 159

                                       
Query: 225 tatcatcactcaccaacaacttgtgatc 252
           || ||||||||||| || ||||||||||
Sbjct: 160 taccatcactcacccaccacttgtgatc 187


>gnl|LJGI|BP075152 similar to UniRef100_A5X538 Cluster: SNF5; n=1; Pisum sativum|Rep:
           SNF5 - Pisum sativum (Garden pea), partial (42%)
          Length = 502

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 124 atcttctgcaaagacatgggtattgaggatc 154
           ||||||||| |||||||||||||||||||||
Sbjct: 489 atcttctgccaagacatgggtattgaggatc 459