Miyakogusa Predicted Gene
- Lj2g3v0044780.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0044780.1 tr|B9N0J6|B9N0J6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_783236 PE=4
SV=1,37.09,9e-19,DNA-binding pseudobarrel domain,DNA-binding
pseudobarrel domain; B3,B3 DNA binding domain; no
descri,NODE_40730_length_1571_cov_161.404205.path1.1
(1071 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74089 similar to UniRef100_Q6R2U8 Cluster: Reduced ve... 2087 0.0
gnl|LJGI|TC80144 similar to UniRef100_Q9LJ67 Cluster: Gb|AAD4315... 359 2e-98
>gnl|LJGI|TC74089 similar to UniRef100_Q6R2U8 Cluster: Reduced vernalization response
1; n=1; Brassica rapa|Rep: Reduced vernalization response
1 - Brassica campestris (Field mustard), partial (43%)
Length = 1722
Score = 2087 bits (1053), Expect = 0.0
Identities = 1070/1073 (99%), Gaps = 2/1073 (0%)
Strand = Plus / Plus
Query: 1 atgtatgaagggaattcatctttcattgttcatattttcaatatgagcacttctgaggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atgtatgaagggaattcatctttcattgttcatattttcaatatgagcacttctgaggtg 471
Query: 61 aattatcagtctgcagtgagaagccgtaatgaagggcctgtctttacgaattatcatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aattatcagtctgcagtgagaagccgtaatgaagggcctgtctttacgaattatcatcat 531
Query: 121 atttttgtcgaaatggaagatacagactccttcgaattcatggattcctctccttcaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atttttgtcgaaatggaagatacagactccttcgaattcatggattcctctccttcaaac 591
Query: 181 cttactcctggttcattgcaaaacaaggtttttggtggatctgtagatcaactgacacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttactcctggttcattgcaaaacaaggtttttggtggatctgtagatcaactgacacct 651
Query: 241 gggaagaatcaatctcctgcacggcagaatttgtttaatggtgggtctaaactcaatcgt 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 652 gggaagaatcaatctcctgcactgcagaatttgtttaatggtgggtctaaactcaatcgt 711
Query: 301 gtgaactggggagatagtgggagtccttttccttcaaaggatgccaattcacagggcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gtgaactggggagatagtgggagtccttttccttcaaaggatgccaattcacagggcaat 771
Query: 361 cactcaaccagagatataggtgttcagtttaatgctgttgaatttaaaaggtctactgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cactcaaccagagatataggtgttcagtttaatgctgttgaatttaaaaggtctactgaa 831
Query: 421 gaattgaaattgcgttatcctaacaatgaggaaggggttagcaaaactgtgaaaaggaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattgaaattgcgttatcctaacaatgaggaaggggttagcaaaactgtgaaaaggaag 891
Query: 481 aggaagtctgaaccaaaaactgtagatggtcaggaaccttctgctgaaaatgaagaggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 aggaagtctgaaccaaaaactgtagatggtcaggaaccttctgctgaaaatgaagaggag 951
Query: 541 gcagaaatgcgctatagattttatgaaagtgcttctgctagaaagagaaccgtgactgcg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 gcagaaatgcgctatagattttatgaaagtgcttctgctagaaagagaaccgtgactgcg 1011
Query: 601 gaggaaagagagagggcaattaatgatgcgaaagcatttgaaccagctaatcctttctgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 gaggaaagagagagggcaattaatgatgcgaaagcatttgaaccagctaatcctttctgt 1071
Query: 661 cgagttgtccttcgaccctcctatttatataggggatgcataatgtatctgccttcctgc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 cgagttgtccttcgaccctcctatttatataggggatgcataatgtatctgccttcctgc 1131
Query: 721 tttgcagaaaagaatttgaat-ggggtttcgggattcatcaaacttcaggttgccgatgg 779
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 tttgcagaaaagaatttgaatgggggtttcgggattcatcaaacttcaggttgccgatgg 1191
Query: 780 gagacagtggccagttcgctgcctatatagaggaggtcgagcaaagttaagccagggttg 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 gagacagtggccagttcgctgcctatatagaggaggtcgagcaaagttaagccagggttg 1251
Query: 840 gtttgaattcaccttagagaacaatttaggggaaggggatgtctgtgtgtttgagctgct 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 gtttgaattcaccttagagaacaatttaggggaaggggatgtctgtgtgtttgagctgct 1311
Query: 900 cagaacgagggatgtagtgctgcaagttactttatttcgtttaactgaagaagtggggtt 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 cagaacgagggatgtagtgctgcaagttactttatttcgtttaactgaagaagtggggtt 1371
Query: 960 gttagaggctcctcctatgcagcagcccagtccaaatgtgagccactctaaactgttgaa 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 gttagaggctcctcctatgcagcagcccagtccaaatgtgagccactctaaactgttgaa 1431
Query: 1020 ccctcacttgcagcatcgcgtcagcac-aaccaaaatggttagaaattagcag 1071
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1432 ccctcacttgcagcatcgcgtcagcacaaaccaaaatggttagaaattagcag 1484
>gnl|LJGI|TC80144 similar to UniRef100_Q9LJ67 Cluster: Gb|AAD43153.1; n=1;
Arabidopsis thaliana|Rep: Gb|AAD43153.1 - Arabidopsis
thaliana (Mouse-ear cress), partial (57%)
Length = 897
Score = 359 bits (181), Expect = 2e-98
Identities = 370/433 (85%)
Strand = Plus / Plus
Query: 530 atgaagaggaggcagaaatgcgctatagattttatgaaagtgcttctgctagaaagagaa 589
|||||||||||| |||||||||| ||||||||| |||||||||||||| ||||| ||||
Sbjct: 136 atgaagaggaggtagaaatgcgcgttagattttacgaaagtgcttctgcaagaaaaagaa 195
Query: 590 ccgtgactgcggaggaaagagagagggcaattaatgatgcgaaagcatttgaaccagcta 649
| ||||| || || |||||||| | ||| | |||| || |||| ||||||||| |||
Sbjct: 196 ctgtgacagctgaagaaagagaaaaggccgtcaatgcagcaaaagagtttgaaccaccta 255
Query: 650 atcctttctgtcgagttgtccttcgaccctcctatttatataggggatgcataatgtatc 709
||||||||||||| |||||||| || |||||||||||||| || |||||||| ||||||
Sbjct: 256 atcctttctgtcgggttgtcctgcggccctcctatttatacagaggatgcattatgtatt 315
Query: 710 tgccttcctgctttgcagaaaagaatttgaatggggtttcgggattcatcaaacttcagg 769
|||| ||||| |||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 316 tgccatcctgttttgcagaaaagcatttgaatggtgtttcgggattcattaaacttcaaa 375
Query: 770 ttgccgatgggagacagtggccagttcgctgcctatatagaggaggtcgagcaaagttaa 829
| ||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||
Sbjct: 376 cctctgatgggagacagtggccggttcgctgcctttatagaggaggtagagccaagttaa 435
Query: 830 gccagggttggtttgaattcaccttagagaacaatttaggggaaggggatgtctgtgtgt 889
|||||||||||| |||||| | ||||| ||||||||||| ||||| |||||||||||||
Sbjct: 436 gccagggttggtctgaatttgcattagataacaatttaggtgaaggtgatgtctgtgtgt 495
Query: 890 ttgagctgctcagaacgagggatgtagtgctgcaagttactttatttcgtttaactgaag 949
||||||| || | | || |||||| | ||||||||||||| |||||||| | |||||||
Sbjct: 496 ttgagctccttaaagtgaaggatgtggcgctgcaagttactctatttcgtgtcactgaag 555
Query: 950 aagtggggttgtt 962
| ||||| |||||
Sbjct: 556 atgtgggattgtt 568
Score = 75.8 bits (38), Expect = 5e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 373 gatataggtgttcagtttaatgctgttgaatttaaaaggtctactgaagaattgaaattg 432
||||||||||| ||||||||||| | ||| ||||||||||||| ||||||| ||||||||
Sbjct: 9 gatataggtgtccagtttaatgcagctgagtttaaaaggtctaatgaagaagtgaaattg 68
Query: 433 cg 434
||
Sbjct: 69 cg 70