Miyakogusa Predicted Gene
- Lj2g3v0039360.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj2g3v0039360.1 Non Chatacterized Hit- tr|I3SGA6|I3SGA6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.86,0,SHS2_Rpb7-N,RNA polymerase Rpb7, N-terminal; S1,Ribosomal
protein S1, RNA-binding domain; no descrip,CUFF.34130.1
(534 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57712 homologue to UniRef100_P46279 Cluster: DNA-dire... 1059 0.0
gnl|LJGI|TC63820 homologue to UniRef100_P46279 Cluster: DNA-dire... 664 0.0
>gnl|LJGI|TC57712 homologue to UniRef100_P46279 Cluster: DNA-directed RNA polymerase
II subunit RPB7; n=1; Glycine max|Rep: DNA-directed RNA
polymerase II subunit RPB7 - Glycine max (Soybean),
partial (98%)
Length = 920
Score = 1059 bits (534), Expect = 0.0
Identities = 534/534 (100%)
Strand = Plus / Plus
Query: 1 atgtttttccacatagtgctggaacggaacatgcagctgcacccacgttactttggccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atgtttttccacatagtgctggaacggaacatgcagctgcacccacgttactttggccgt 212
Query: 61 aatcttcgtgataatcttgttgccaagctaatgaaagatgtggaaggaacttgcagtggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aatcttcgtgataatcttgttgccaagctaatgaaagatgtggaaggaacttgcagtggt 272
Query: 121 cggcatggatttgtggtggcggttacagggatagaaaatgttggaaaagggttaattcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cggcatggatttgtggtggcggttacagggatagaaaatgttggaaaagggttaattcgt 332
Query: 181 gatggtacagggttcgtgacatttccggttaagtaccaatgtgtcgtcttcagaccattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gatggtacagggttcgtgacatttccggttaagtaccaatgtgtcgtcttcagaccattt 392
Query: 241 aagggagagatcttagaagctgttgttaccatggtgaataagatgggattttttgctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagggagagatcttagaagctgttgttaccatggtgaataagatgggattttttgctgaa 452
Query: 301 gctggacctgttcaaatcttcgtctcaaaccatttgattccagatgatatggagttccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gctggacctgttcaaatcttcgtctcaaaccatttgattccagatgatatggagttccag 512
Query: 361 tctggtgacatgccaaattacactacttcagatggatcagttaagattcagaaagatagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tctggtgacatgccaaattacactacttcagatggatcagttaagattcagaaagatagt 572
Query: 421 gaagtgagactaaagataattgggactcgagtggatgctaccgaaattttctgcatagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaagtgagactaaagataattgggactcgagtggatgctaccgaaattttctgcatagga 632
Query: 481 accataaaagatgatttcttgggtgtgatcaacgaccctgtagcaatctaaatg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 accataaaagatgatttcttgggtgtgatcaacgaccctgtagcaatctaaatg 686
>gnl|LJGI|TC63820 homologue to UniRef100_P46279 Cluster: DNA-directed RNA polymerase
II subunit RPB7; n=1; Glycine max|Rep: DNA-directed RNA
polymerase II subunit RPB7 - Glycine max (Soybean),
partial (73%)
Length = 782
Score = 664 bits (335), Expect = 0.0
Identities = 335/335 (100%)
Strand = Plus / Plus
Query: 1 atgtttttccacatagtgctggaacggaacatgcagctgcacccacgttactttggccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 atgtttttccacatagtgctggaacggaacatgcagctgcacccacgttactttggccgt 209
Query: 61 aatcttcgtgataatcttgttgccaagctaatgaaagatgtggaaggaacttgcagtggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aatcttcgtgataatcttgttgccaagctaatgaaagatgtggaaggaacttgcagtggt 269
Query: 121 cggcatggatttgtggtggcggttacagggatagaaaatgttggaaaagggttaattcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cggcatggatttgtggtggcggttacagggatagaaaatgttggaaaagggttaattcgt 329
Query: 181 gatggtacagggttcgtgacatttccggttaagtaccaatgtgtcgtcttcagaccattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gatggtacagggttcgtgacatttccggttaagtaccaatgtgtcgtcttcagaccattt 389
Query: 241 aagggagagatcttagaagctgttgttaccatggtgaataagatgggattttttgctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagggagagatcttagaagctgttgttaccatggtgaataagatgggattttttgctgaa 449
Query: 301 gctggacctgttcaaatcttcgtctcaaaccattt 335
|||||||||||||||||||||||||||||||||||
Sbjct: 450 gctggacctgttcaaatcttcgtctcaaaccattt 484
Score = 133 bits (67), Expect = 1e-30
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 468 tttctgcataggaaccataaaagatgatttcttgggtgtgatcaacgaccctgtagcaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttctgcataggaaccataaaagatgatttcttgggtgtgatcaacgaccctgtagcaat 541
Query: 528 ctaaatg 534
|||||||
Sbjct: 542 ctaaatg 548