Miyakogusa Predicted Gene
- Lj1g3v5061060.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v5061060.1 tr|Q2HSE6|Q2HSE6_MEDTR Pentatricopeptide repeat
OS=Medicago truncatula GN=MTR_7g016910 PE=4
SV=1,69.15,0,PPR_2,Pentatricopeptide repeat; PPR_1,Pentatricopeptide
repeat; PPR,Pentatricopeptide repeat;
TPR-li,NODE_37265_length_3067_cov_19.178024.path1.1
(2369 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67561 similar to UniRef100_Q2HSE6 Cluster: Pentatrico... 898 0.0
gnl|LJGI|TC63517 56 1e-06
>gnl|LJGI|TC67561 similar to UniRef100_Q2HSE6 Cluster: Pentatricopeptide repeat; n=1;
Medicago truncatula|Rep: Pentatricopeptide repeat -
Medicago truncatula (Barrel medic), partial (12%)
Length = 808
Score = 898 bits (453), Expect = 0.0
Identities = 470/476 (98%), Gaps = 6/476 (1%)
Strand = Plus / Plus
Query: 313 atcaagcaagacgccgttgttcttcatcctcaatccttcaaccctcttctccactccctc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atcaagcaagacgccgttgttcttcatcctcaatccttcaaccctcttctccactccctc 398
Query: 373 atcatctcccataacttccatgaaaccctccagatcttagattacatccaacaacgacac 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atcatctcccataacttccatgaaaccctccagatcttagattacatccaacaacgacac 458
Query: 433 ctgcttcaaccgggatgcaccccgctcatctacaactctcttcttattgcttcccttcga 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctgcttcaaccgggatgcaccccgctcatctacaactctcttcttattgcttcccttcga 518
Query: 493 aacaaccacatccctctcgcattctccatcttcctcaagctcattgaattattcgatcac 552
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 519 aacaaccacatccctctcgcattctccatcttcctcaagctcattgaattatt------c 572
Query: 553 gatcacgatcacgatcacgatcatgctgctcttgattccaattccaattccaattccatt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gatcacgatcacgatcacgatcatgctgctcttgattccaattccaattccaattccatt 632
Query: 613 gctttcaatcagttgctcgttgccctcagaaaagccgacatgaagcttgagttccaacaa 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gctttcaatcagttgctcgttgccctcagaaaagccgacatgaagcttgagttccaacaa 692
Query: 673 gtgtttcacaaactcatggacaagaaaggcttcgctcttgatacctggggctacaatatc 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gtgtttcacaaactcatggacaagaaaggcttcgctcttgatacctggggctacaatatc 752
Query: 733 tgcattcatgcatttggttgctggggtgatttggctacttccttcagccttttcca 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tgcattcatgcatttggttgctggggtgatttggctacttccttcagccttttcca 808
Score = 486 bits (245), Expect = e-136
Identities = 245/245 (100%)
Strand = Plus / Plus
Query: 1 atgagatcagcgcaacaagtcggagagttgctcttagttgcctccatcaccaacagtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 atgagatcagcgcaacaagtcggagagttgctcttagttgcctccatcaccaacagtctc 86
Query: 61 tctaagtctaagtctaagtcttgtgctcctgttctgaatctcctccctcctcaacacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tctaagtctaagtctaagtcttgtgctcctgttctgaatctcctccctcctcaacacaag 146
Query: 121 caactcctcactgaacccgtcatcctccaaatcctatcaaaccctactcttcacccttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 caactcctcactgaacccgtcatcctccaaatcctatcaaaccctactcttcacccttcc 206
Query: 181 cacaaactccatttcttcaactggtgtcgctcccatcattcctccccactttccccctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cacaaactccatttcttcaactggtgtcgctcccatcattcctccccactttccccctct 266
Query: 241 gctta 245
|||||
Sbjct: 267 gctta 271
>gnl|LJGI|TC63517
Length = 1244
Score = 56.0 bits (28), Expect = 1e-06
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 548 atcacgatcacgatcacgatcacgatca 575
||||||||||||||||||||||||||||
Sbjct: 164 atcacgatcacgatcacgatcacgatca 137