Miyakogusa Predicted Gene
- Lj1g3v5038210.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v5038210.2 tr|H3G9I1|H3G9I1_PHYRM DNA-directed RNA
polymerase subunit OS=Phytophthora ramorum
GN=fgenesh1_pm.C_,46.85,8e-19,RNA polymerase subunit,DNA-directed RNA
polymerase, M/15kDa subunit; C2C2 Zinc finger,Zinc finger,
T,CUFF.33918.2
(336 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66733 weakly similar to UniRef100_Q6EU09 Cluster: DNA... 666 0.0
gnl|LJGI|TC80465 similar to UniRef100_Q5A5N9 Cluster: DNA-direct... 628 e-180
>gnl|LJGI|TC66733 weakly similar to UniRef100_Q6EU09 Cluster: DNA-directed RNA
polymerase subunit; n=1; Oryza sativa Japonica
Group|Rep: DNA-directed RNA polymerase subunit - Oryza
sativa subsp. japonica (Rice), partial (55%)
Length = 691
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 atggagttttgcccttcgtgcagtaacatgctgaaatttgaactgcccaatatgggtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 atggagttttgcccttcgtgcagtaacatgctgaaatttgaactgcccaatatgggtcac 263
Query: 61 aactcaagacttttttgtcaaacttgcccctacgtttgctacatcgagaaaggggttaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactcaagacttttttgtcaaacttgcccctacgtttgctacatcgagaaaggggttaag 323
Query: 121 attaagagaaagcagcgcttggtcagaaaagagattgatcctgttatctcttatgatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attaagagaaagcagcgcttggtcagaaaagagattgatcctgttatctcttatgatgac 383
Query: 181 atgaagaatgcccccacaaccgaagttcgatgcccaaattgcagtcatgataaagctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgaagaatgcccccacaaccgaagttcgatgcccaaattgcagtcatgataaagctgcc 443
Query: 241 tacacagaaatgcagattcgatcagctgatgagcccgcaactatattttactggtgcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tacacagaaatgcagattcgatcagctgatgagcccgcaactatattttactggtgcttg 503
Query: 301 aatgaaaagtgtaggcatcaatggcgtgaggattga 336
||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatgaaaagtgtaggcatcaatggcgtgaggattga 539
>gnl|LJGI|TC80465 similar to UniRef100_Q5A5N9 Cluster: DNA-directed RNA polymerase
subunit; n=1; Candida albicans|Rep: DNA-directed RNA
polymerase subunit - Candida albicans (Yeast), partial
(29%)
Length = 706
Score = 628 bits (317), Expect = e-180
Identities = 333/337 (98%), Gaps = 1/337 (0%)
Strand = Plus / Plus
Query: 1 atggagttttgcccttcgtgcagtaacatgctgaaatttgaactgcccaatatgggtcac 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atggagttttgcccgtcgtgcagtaacatgctgaaatttgaactgcccaatatgggtcac 237
Query: 61 aactcaagacttttttgtcaaacttgcccctacgtttgctacatcgagaaaggggttaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aactcaagacttttttgtcaaacttgcccctacgtttgctacatcgagaaaggggttaag 297
Query: 121 attaagagaaagcagcgcttggtcagaaaagagattgatcctgttatctcttatgatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 attaagagaaagcagcgcttggtcagaaaagagattgatcctgttatctcttatgatgac 357
Query: 181 atgaagaatgcccccacaaccgaagttcgatgccca-aattgcagtcatgataaagctgc 239
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 358 atgaagaatgcccccacaaccgaagttcgatgcccacaattccagtcatgataaagctgc 417
Query: 240 ctacacagaaatgcagattcgatcagctgatgagcccgcaactatattttactggtgctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctacacagaaatgcagattcgatcagctgatgagcccgcaactatattttactggtgctt 477
Query: 300 gaatgaaaagtgtaggcatcaatggcgtgaggattga 336
|||||||||||||||||||||||||||||| ||||||
Sbjct: 478 gaatgaaaagtgtaggcatcaatggcgtgaagattga 514