Miyakogusa Predicted Gene
- Lj1g3v5036100.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v5036100.1 tr|B4FKL9|B4FKL9_MAIZE Fiber protein Fb11 OS=Zea
mays PE=4 SV=1,76.19,2e-19, ,CUFF.33915.1
(192 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69709 similar to UniRef100_Q8GT82 Cluster: Fiber prot... 381 e-105
gnl|LJGI|TC69539 similar to UniRef100_Q8GT82 Cluster: Fiber prot... 381 e-105
gnl|LJGI|DC594681 similar to UniRef100_Q8GT82 Cluster: Fiber pro... 113 4e-25
>gnl|LJGI|TC69709 similar to UniRef100_Q8GT82 Cluster: Fiber protein Fb11; n=1;
Gossypium barbadense|Rep: Fiber protein Fb11 - Gossypium
barbadense (Sea-island cotton) (Egyptian cotton),
partial (97%)
Length = 664
Score = 381 bits (192), Expect = e-105
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 1 atggcagtgatggagaacctcaagatgttcgttgttcaacagcctgtagtcgccgcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 atggcagtgatggagaacctcaagatgttcgttgttcaacagcctgtagtcgccgcttcc 140
Query: 61 tgtctcatcgctggcttcggactttttcttccagcctttgtgaggcccatgctggattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tgtctcatcgctggcttcggactttttcttccagcctttgtgaggcccatgctggattca 200
Query: 121 tatcagggaaccaagccagctcctcaacctgctttaaacgatgtggttgcaggtatgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcagggaaccaagccagctcctcaacctgctttaaacgatgtggttgcaggtatgact 260
Query: 181 ggtaaaaagtga 192
||||||||||||
Sbjct: 261 ggtaaaaagtga 272
>gnl|LJGI|TC69539 similar to UniRef100_Q8GT82 Cluster: Fiber protein Fb11; n=1;
Gossypium barbadense|Rep: Fiber protein Fb11 - Gossypium
barbadense (Sea-island cotton) (Egyptian cotton),
partial (97%)
Length = 626
Score = 381 bits (192), Expect = e-105
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 1 atggcagtgatggagaacctcaagatgttcgttgttcaacagcctgtagtcgccgcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atggcagtgatggagaacctcaagatgttcgttgttcaacagcctgtagtcgccgcttcc 212
Query: 61 tgtctcatcgctggcttcggactttttcttccagcctttgtgaggcccatgctggattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgtctcatcgctggcttcggactttttcttccagcctttgtgaggcccatgctggattca 272
Query: 121 tatcagggaaccaagccagctcctcaacctgctttaaacgatgtggttgcaggtatgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tatcagggaaccaagccagctcctcaacctgctttaaacgatgtggttgcaggtatgact 332
Query: 181 ggtaaaaagtga 192
||||||||||||
Sbjct: 333 ggtaaaaagtga 344
>gnl|LJGI|DC594681 similar to UniRef100_Q8GT82 Cluster: Fiber protein Fb11; n=1;
Gossypium barbadense|Rep: Fiber protein Fb11 - Gossypium
barbadense (Sea-island cotton) (Egyptian cotton),
partial (42%)
Length = 545
Score = 113 bits (57), Expect = 4e-25
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 24 gatgttcgttgttcaacagcctgtagtcgccgcttcctgtctcatcgctggcttcgg 80
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gatgttcgttgttcaacagcctgtagtcgccgcttcctgtctcatcgctggcttcgg 200