Miyakogusa Predicted Gene

Lj1g3v5034780.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v5034780.1 Non Chatacterized Hit- tr|I1KHV6|I1KHV6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25262
PE,67.32,0,ZF_PHD_1,Zinc finger, PHD-type, conserved site; no
description,NULL; no description,Zinc finger, RIN,CUFF.33901.1
         (2799 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75232 similar to UniRef100_UPI00015057FC Cluster: DNA...   133   7e-30
gnl|LJGI|TC74284 homologue to UniRef100_A7QEQ4 Cluster: Chromoso...    62   2e-08

>gnl|LJGI|TC75232 similar to UniRef100_UPI00015057FC Cluster: DNA binding; n=1;
            Arabidopsis thaliana|Rep: DNA binding - Arabidopsis
            thaliana, partial (7%)
          Length = 543

 Score =  133 bits (67), Expect = 7e-30
 Identities = 128/149 (85%), Gaps = 6/149 (4%)
 Strand = Plus / Plus

                                                                        
Query: 2576 agggcaatattgcacgtttaataaaccattcttgcatgccaaactgctatgcaaggatta 2635
            |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 7    agggcaatatagcacgtttgataaaccattcctgcatgccnaactgctatgcaaggatta 66

                                                                        
Query: 2636 tgtgtttgggtgatc------atgagaaccggattgttcttattgccaagaccaatattt 2689
            || ||||||||||||      | |||| |||||| ||||| |||||| | ||| || |||
Sbjct: 67   tgagtttgggtgatcaagaggaagagagccggatcgttctcattgcccaaacccatgttt 126

                                         
Query: 2690 cggctggtgaagaactaatgtatgattac 2718
            | |||||||||||||||| ||||||||||
Sbjct: 127  ctgctggtgaagaactaacgtatgattac 155


>gnl|LJGI|TC74284 homologue to UniRef100_A7QEQ4 Cluster: Chromosome chr16 scaffold_86,
            whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
            Chromosome chr16 scaffold_86, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (5%)
          Length = 506

 Score = 61.9 bits (31), Expect = 2e-08
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                        
Query: 2643 gggtgatcatgagaaccggattgttcttattgccaagaccaatatttcggctggtgaaga 2702
            ||||||| |||||| ||| ||||| || ||||| ||||| ||  | ||  ||||||| ||
Sbjct: 1    gggtgatgatgagagccgaattgtgctcattgcaaagactaacgtatctactggtgatga 60

                                               
Query: 2703 actaatgtatgattacttgtttgatccggatgagc 2737
            ||||| |||||| |||||||||||||| |||||||
Sbjct: 61   actaacgtatgactacttgtttgatcctgatgagc 95