Miyakogusa Predicted Gene
- Lj1g3v5034490.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v5034490.1 Non Chatacterized Hit- tr|F6QI71|F6QI71_XENTR
Uncharacterized protein (Fragment) OS=Xenopus
tropical,32.35,9.6,seg,NULL,CUFF.33931.1
(463 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP041637 141 4e-33
gnl|LJGI|BP055890 similar to UniRef100_Q95HN6 Cluster: MHC class... 56 2e-07
gnl|LJGI|TC78456 similar to UniRef100_A7QE22 Cluster: Chromosome... 56 2e-07
gnl|LJGI|TC76490 52 3e-06
>gnl|LJGI|BP041637
Length = 457
Score = 141 bits (71), Expect = 4e-33
Identities = 126/143 (88%), Gaps = 1/143 (0%)
Strand = Plus / Plus
Query: 322 ctactacatatccatgttctgctccttcaatacataattattcatttgaatcatcaccat 381
||||||| ||||||||| ||||||||||||||||| || |||||||||||| |||||||
Sbjct: 1 ctactacgtatccatgtactgctccttcaatacattatagttcatttgaatcctcaccat 60
Query: 382 ctccta-ctcttccccatgtttcaattccttctcctcattcacctcaccaaatgctcttt 440
|||||| |||| ||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct: 61 ctcctatttctttcccatgtttcagttccttctcctcattcacctcaccatcttctcttt 120
Query: 441 catgttcttcctctgtatgtaat 463
||| ||||| |||| |||||||
Sbjct: 121 catcttcttgctcttcatgtaat 143
Score = 67.9 bits (34), Expect = 5e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 340 ctgctccttcaatacataattattcatttgaatcatcaccatctcctactcttccccatg 399
|||||||||||| | |||| |||| |||||||| ||||||||| ||| || ||||||
Sbjct: 303 ctgctccttcaagccttaatgtttcacttgaatcagaaccatctccaactttttcccatg 362
Query: 400 tttcaattccttctcctcattcacct 425
|||| ||||||||||||||||||||
Sbjct: 363 gttcacttccttctcctcattcacct 388
>gnl|LJGI|BP055890 similar to UniRef100_Q95HN6 Cluster: MHC class I chain-related
protein A; n=4; Homo sapiens|Rep: MHC class I
chain-related protein A - Homo sapiens (Human), partial
(5%)
Length = 542
Score = 56.0 bits (28), Expect = 2e-07
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 191 ccactttctcaatctatagagaagttaaatttcaggagtccaaatttctttctttcacca 250
||||||||| | ||| || ||| || |||||||| | ||||||| |||||||||||||||
Sbjct: 326 ccactttctaattctctaaagatgtaaaatttcaagtgtccaaagttctttctttcacca 267
Query: 251 cttcacct 258
|| |||||
Sbjct: 266 ctgcacct 259
>gnl|LJGI|TC78456 similar to UniRef100_A7QE22 Cluster: Chromosome chr4 scaffold_83,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_83, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 709
Score = 56.0 bits (28), Expect = 2e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 39 tagaaatgttaacattcttgagtccaaatttccttctttcaccacttcacgtcctt 94
|||| ||||||| ||||| |||||||||||| |||||||| |||||||| |||||
Sbjct: 662 tagacatgttaaatttctttagtccaaatttcattctttcatcacttcacatcctt 607
>gnl|LJGI|TC76490
Length = 979
Score = 52.0 bits (26), Expect = 3e-06
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 39 tagaaatgttaacattcttgagtccaaatttccttctttcaccacttcacgtcctttgaa 98
|||| ||||||| ||||| ||||||||||| |||||||| |||||||| ||||| ||
Sbjct: 288 tagacatgttaaatttctttagtccaaatttaattctttcatcacttcacatccttaaaa 347
Query: 99 aattatttcttctaccac 116
||| | ||||||| ||||
Sbjct: 348 aatcacttcttctcccac 365