Miyakogusa Predicted Gene
- Lj1g3v5020940.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v5020940.2 Non Chatacterized Hit- tr|I1MIM1|I1MIM1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46928
PE,85.73,0,RB_A,Retinoblastoma-associated protein, A-box;
RB_B,Retinoblastoma-associated protein, B-box; DUF345,CUFF.33841.2
(2709 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82665 similar to UniRef100_A9UL14 Cluster: Retinoblas... 1897 0.0
gnl|LJGI|TC64733 similar to UniRef100_Q9SLZ4 Cluster: Retinoblas... 1199 0.0
gnl|LJGI|TC77976 similar to UniRef100_Q9SLZ4 Cluster: Retinoblas... 609 e-173
gnl|LJGI|TC82542 78 3e-13
>gnl|LJGI|TC82665 similar to UniRef100_A9UL14 Cluster: Retinoblastoma-related protein;
n=1; Medicago sativa|Rep: Retinoblastoma-related protein
- Medicago sativa (Alfalfa), partial (31%)
Length = 962
Score = 1897 bits (957), Expect = 0.0
Identities = 960/961 (99%)
Strand = Plus / Plus
Query: 1408 atttttcctagtagtcctcttggtgaacgatgtgtaactggaagcctgcaaagtgcaaat 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atttttcctagtagtcctcttggtgaacgatgtgtaactggaagcctgcaaagtgcaaat 61
Query: 1468 atcatggacaatatatgggcggaacagcgaagattagaagcactgaagttttactatagg 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 atcatggacaatatatgggcggaacagcgaagattagaagcactgaagttttactatagg 121
Query: 1528 gtattggaagcaatgtgcagagcagaagcccaaacactacatgcaactaatttaacttct 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gtattggaagcaatgtgcagagcagaagcccaaacactacatgcaactaatttaacttct 181
Query: 1588 cttctaactaatgagaggtttcataggtgtatgcttgcatgttctgcagaattggtcctg 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cttctaactaatgagaggtttcataggtgtatgcttgcatgttctgcagaattggtcctg 241
Query: 1648 gcaactcacaagactgtaacaatgctgttccctgcagtactggagaggactgggattaca 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gcaactcacaagactgtaacaatgctgttccctgcagtactggagaggactgggattaca 301
Query: 1708 gcttttgatctgagcaaggtgattgaaagtttcattagacatgaagaatcgctcccaaga 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcttttgatctgagcaaggtgattgaaagtttcattagacatgaagaatcgctcccaaga 361
Query: 1768 gaattgaggcgacatctgaactcattggaagaacgacttttggagagcatggtatggcaa 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaattgaggcgacatctgaactcattggaagaacgacttttggagagcatggtatggcaa 421
Query: 1828 aagggttcttcaatgtataattctttggcagttgctagacctgccctttctgcagaaatc 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aagggttcttcaatgtataattctttggcagttgctagacctgccctttctgcagaaatc 481
Query: 1888 aatcgtcttggactgttagctgaaccaatgccatcattggatgagattgcaatgcagatt 1947
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aatcgtcttggaatgttagctgaaccaatgccatcattggatgagattgcaatgcagatt 541
Query: 1948 aacttctcttacggagggcttcctcctgtgccttccttgcctaagcttgagacttcacca 2007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aacttctcttacggagggcttcctcctgtgccttccttgcctaagcttgagacttcacca 601
Query: 2008 attcaaattggggataccagatcaccaaagcgtctctgtacagaacatcgaaatgtgttt 2067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 attcaaattggggataccagatcaccaaagcgtctctgtacagaacatcgaaatgtgttt 661
Query: 2068 gtggaacggaattctttcgcttcaccagtgaaagatcggcttcttcccttcagcaaccct 2127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtggaacggaattctttcgcttcaccagtgaaagatcggcttcttcccttcagcaaccct 721
Query: 2128 atgtcaaagctacccccacctcctttgcagtcagcatttgccagtccaacaaaaccaaac 2187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atgtcaaagctacccccacctcctttgcagtcagcatttgccagtccaacaaaaccaaac 781
Query: 2188 ccaggaggtggaggggaaacatgtgcagaaactgggatcaacatcttttttggcaagatc 2247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ccaggaggtggaggggaaacatgtgcagaaactgggatcaacatcttttttggcaagatc 841
Query: 2248 attaagttgggagcagtcagaataagtggcatggttgaaagactacaattatcccagcag 2307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 attaagttgggagcagtcagaataagtggcatggttgaaagactacaattatcccagcag 901
Query: 2308 ataagggagaatgtatactgtcttttccagcgaatcctaaatcaacggacatctcttttc 2367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ataagggagaatgtatactgtcttttccagcgaatcctaaatcaacggacatctcttttc 961
Query: 2368 t 2368
|
Sbjct: 962 t 962
>gnl|LJGI|TC64733 similar to UniRef100_Q9SLZ4 Cluster: Retinoblastoma-related
protein; n=1; Pisum sativum|Rep: Retinoblastoma-related
protein - Pisum sativum (Garden pea), partial (20%)
Length = 725
Score = 1199 bits (605), Expect = 0.0
Identities = 619/626 (98%)
Strand = Plus / Plus
Query: 1 atgagtcctccagctgcacctgacatggaacttgtcaaccctccggttgctcctgtcgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 atgagtcctccagctgcacctgacatggaacttgtcaaccctccggttgctcctgtcgat 159
Query: 61 aatggcgaccaagctgactctcgcttcgccgacttttgcaagaatgggctagcattggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aatggcgaccaagctgactctcgcttcgccgacttttgcaagaatgggctagcattggat 219
Query: 121 gagaaaagttgtaaagaagcaatcaatctgttcggagaaaccgaacatattctactaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gagaaaagttgtaaagaagcaatcaatctgttcggagaaaccgaacatattctactaaca 279
Query: 181 tatgtttcatcaatgggaaatggaatgtctgaagatgctgagcgatactggttcgctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tatgtttcatcaatgggaaatggaatgtctgaagatgctgagcgatactggttcgctttt 339
Query: 241 attttatactctgtcaagagattgactacaaaaaatgaggagagtggggaggaagagact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 attttatactctgtcaagagattgactacaaaaaatgaggagagtggggaggaagagact 399
Query: 301 gagaacactgggctgaccttttgtcgtatattgagagcagctaagcttagcattgcagan 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gagaacactgggctgaccttttgtcgtatattgagagcagctaagcttagcattgcagat 459
Query: 361 nnnnnnaaagagcttcctcagtttgttgttaaggctggtccaattttaagtaatttatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttttttaaagagcttcctcagtttgttgttaaggctggtccaattttaagtaatttatat 519
Query: 421 ggcaaagattgggaaaacagacttcaggcaaaggagatgcatgccaatgctattcatttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggcaaagattgggaaaacagacttcaggcaaaggagatgcatgccaatgctattcatttg 579
Query: 481 acgattcttagcaagtactacaaacgtatatttgcagagttctttgttgcttctgatgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 acgattcttagcaagtactacaaacgtatatttgcagagttctttgttgcttctgatgca 639
Query: 541 aatattgaaaagaactcatctgttactgttcatgcatctgattatcatcgctttggatgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aatattgaaaagaactcatctgttactgttcatgcatctgattatcatcgctttggatgg 699
Query: 601 ttacttttcttggcacttcgtgtaca 626
||||||||||||||||||||||||||
Sbjct: 700 ttacttttcttggcacttcgtgtaca 725
>gnl|LJGI|TC77976 similar to UniRef100_Q9SLZ4 Cluster: Retinoblastoma-related protein;
n=1; Pisum sativum|Rep: Retinoblastoma-related protein -
Pisum sativum (Garden pea), partial (22%)
Length = 911
Score = 609 bits (307), Expect = e-173
Identities = 307/307 (100%)
Strand = Plus / Plus
Query: 2392 attctgtgttgcttctacggagttgcaaagatttcacaactcagcctaacctttagggag 2451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attctgtgttgcttctacggagttgcaaagatttcacaactcagcctaacctttagggag 60
Query: 2452 atcatacagggctacagaaagcaaccacattgcaaacaccaagtttttcgtagtgtattt 2511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcatacagggctacagaaagcaaccacattgcaaacaccaagtttttcgtagtgtattt 120
Query: 2512 gttgattggtcatcagcacgtcgtaatggagctagtaaacagagaacaggacaggatcat 2571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttgattggtcatcagcacgtcgtaatggagctagtaaacagagaacaggacaggatcat 180
Query: 2572 gtcgacatcattacattttacaatcaaatattcattccctctgtaaagccactgctggtt 2631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtcgacatcattacattttacaatcaaatattcattccctctgtaaagccactgctggtt 240
Query: 2632 gaacttggccctggtggagcaaccatgaaaagtgaccaaatgcatgaagttaataataaa 2691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaacttggccctggtggagcaaccatgaaaagtgaccaaatgcatgaagttaataataaa 300
Query: 2692 aatgacg 2698
|||||||
Sbjct: 301 aatgacg 307
>gnl|LJGI|TC82542
Length = 986
Score = 77.8 bits (39), Expect = 3e-13
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 367 aaagagcttcctcagtttgttgttaaggctggtccaattttaagtaatttatatggcaaa 426
||||||||| |||||||| |||| |||||||||||||||||||||||| ||| || || |
Sbjct: 834 aaagagctttctcagttt-ttgtcaaggctggtccaattttaagtaatctatttgacaca 892
Query: 427 gattgggaaaa 437
|||||||||||
Sbjct: 893 gattgggaaaa 903