Miyakogusa Predicted Gene

Lj1g3v4997250.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4997250.1 Non Chatacterized Hit- tr|A9NUV7|A9NUV7_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,71.67,2e-19,KH_TYPE_1,K Homology domain, type 1; KH
DOMAIN-CONTAINING PROTEIN,NULL; KH DOMAIN CONTAINING RNA
BIN,CUFF.33914.1
         (352 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59955 similar to UniRef100_A7QMQ0 Cluster: Chromosome...   611   e-174
gnl|LJGI|TC58201 similar to UniRef100_A7QMQ0 Cluster: Chromosome...    58   4e-08

>gnl|LJGI|TC59955 similar to UniRef100_A7QMQ0 Cluster: Chromosome undetermined
           scaffold_127, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_127,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (55%)
          Length = 1045

 Score =  611 bits (308), Expect = e-174
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctgaggttgatcagaacacaggtgaattcgaggcggagcaagtaattgagaactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 atggctgaggttgatcagaacacaggtgaattcgaggcggagcaagtaattgagaactca 228

                                                                       
Query: 61  gagctgccggaggaacaacacgaagggcgtgtcgaggttgagcagcaacaggttgaacgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gagctgccggaggaacaacacgaagggcgtgtcgaggttgagcagcaacaggttgaacgg 288

                                                                       
Query: 121 cctattgctgctgctgagaagaaatggccggggtggcccggggagagtgtgttccgaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cctattgctgctgctgagaagaaatggccggggtggcccggggagagtgtgttccgaatg 348

                                                                       
Query: 181 ctagttccggcgcacaaggttgggggtataattggacgcaaaggagaatttattaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctagttccggcgcacaaggttgggggtataattggacgcaaaggagaatttattaagaaa 408

                                                                       
Query: 241 attgtggaggagacgcgagctcgcgttaaaattcttgatggtcctccgggaactccagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 attgtggaggagacgcgagctcgcgttaaaattcttgatggtcctccgggaactccagaa 468

                   
Query: 301 agggctgt 308
           ||||||||
Sbjct: 469 agggctgt 476


>gnl|LJGI|TC58201 similar to UniRef100_A7QMQ0 Cluster: Chromosome undetermined
           scaffold_127, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_127,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (20%)
          Length = 828

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                       
Query: 139 aagaaatggccggggtggcccggggagagtgtgttccgaatgctagttccggcgcacaag 198
           ||||| |||||||||||||| || |||| ||| ||| | ||| | ||||| ||||| |||
Sbjct: 549 aagaagtggccggggtggcctggagagaatgttttcaggatgttggttcctgcgcaaaag 608

                                                        
Query: 199 gttgggggtataattggacgcaaaggagaatttattaagaaaatt 243
           |||||  |||| ||||| || || || || |||||||||||||||
Sbjct: 609 gttggcagtattattggccgtaagggcgagtttattaagaaaatt 653