Miyakogusa Predicted Gene
- Lj1g3v4997240.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4997240.1 Non Chatacterized Hit- tr|I1QUH1|I1QUH1_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1,40.6,5e-16,KH
DOMAIN-CONTAINING PROTEIN,NULL; KH DOMAIN CONTAINING RNA BINDING
PROTEIN,NULL; K homology RNA-bin,CUFF.33913.1
(1371 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59955 similar to UniRef100_A7QMQ0 Cluster: Chromosome... 1739 0.0
gnl|LJGI|TC70700 similar to UniRef100_Q58T16 Cluster: FLK; n=1; ... 595 e-169
gnl|LJGI|TC78117 similar to UniRef100_A7PUN7 Cluster: Chromosome... 78 2e-13
gnl|LJGI|TC58201 similar to UniRef100_A7QMQ0 Cluster: Chromosome... 64 2e-09
>gnl|LJGI|TC59955 similar to UniRef100_A7QMQ0 Cluster: Chromosome undetermined
scaffold_127, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_127, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(55%)
Length = 1045
Score = 1739 bits (877), Expect = 0.0
Identities = 877/877 (100%)
Strand = Plus / Plus
Query: 1 atggctgaggttgatcagaacacaggtgaattcgaggcggagcaagtaattgagaactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 atggctgaggttgatcagaacacaggtgaattcgaggcggagcaagtaattgagaactca 228
Query: 61 gagctgccggaggaacaacacgaagggcgtgtcgaggttgagcagcaacaggttgaacgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gagctgccggaggaacaacacgaagggcgtgtcgaggttgagcagcaacaggttgaacgg 288
Query: 121 cctattgctgctgctgagaagaaatggccggggtggcccggggagagtgtgttccgaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cctattgctgctgctgagaagaaatggccggggtggcccggggagagtgtgttccgaatg 348
Query: 181 ctagttccggcgcacaaggttgggggtataattggacgcaaaggagaatttattaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctagttccggcgcacaaggttgggggtataattggacgcaaaggagaatttattaagaaa 408
Query: 241 attgtggaggagacgcgagctcgcgttaaaattcttgatggtcctccgggaactccagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 attgtggaggagacgcgagctcgcgttaaaattcttgatggtcctccgggaactccagaa 468
Query: 301 agggctgtaatggtatcagctaaagaggagcccgactcttctctccctcctgctatagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agggctgtaatggtatcagctaaagaggagcccgactcttctctccctcctgctatagat 528
Query: 361 ggcttattgagggttcataaacgggtaattgatggtttggagaatgattctacccatgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggcttattgagggttcataaacgggtaattgatggtttggagaatgattctacccatgct 588
Query: 421 tcttcaggtgttgtcgcgaaggtttctacaaagctactagtgccagcctcacaagcagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tcttcaggtgttgtcgcgaaggtttctacaaagctactagtgccagcctcacaagcagga 648
Query: 481 agtttaattgggaaacaaggaggaactgtaaaatctatccaagaagcgtcaaattgtata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 agtttaattgggaaacaaggaggaactgtaaaatctatccaagaagcgtcaaattgtata 708
Query: 541 gttagagttcttggagcagaagacctgcctagttttgctcttcaagatgatagggtggtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gttagagttcttggagcagaagacctgcctagttttgctcttcaagatgatagggtggtt 768
Query: 601 gaagtacttggggatcccactggagtgcataaggcagtagaactaattgtatctcactta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gaagtacttggggatcccactggagtgcataaggcagtagaactaattgtatctcactta 828
Query: 661 aggaagtttttagttgatcgcggtgtaattccaatttttgaaatgaatatgcaaacggct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aggaagtttttagttgatcgcggtgtaattccaatttttgaaatgaatatgcaaacggct 888
Query: 721 aattcccatcatgtggagcacatgcctccccaccaatcatggggccctcctcagggtctt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 aattcccatcatgtggagcacatgcctccccaccaatcatggggccctcctcagggtctt 948
Query: 781 ccaccaaatgctggtggaggtcctggttttggacctccccctcctcaatacatgccgcct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 ccaccaaatgctggtggaggtcctggttttggacctccccctcctcaatacatgccgcct 1008
Query: 841 ccgcgacagcatgataattactatccaccagctgaaa 877
|||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ccgcgacagcatgataattactatccaccagctgaaa 1045
>gnl|LJGI|TC70700 similar to UniRef100_Q58T16 Cluster: FLK; n=1; Arabidopsis
thaliana|Rep: FLK - Arabidopsis thaliana (Mouse-ear
cress), partial (14%)
Length = 587
Score = 595 bits (300), Expect = e-169
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1072 agaagagctagtggggctactgttgccatacaagaaacaagaggtgttcctggggagatg 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagagctagtggggctactgttgccatacaagaaacaagaggtgttcctggggagatg 60
Query: 1132 acagttgaaatcagtggaactgctgctcaagtccaaacagcgcagcaactgatacagaat 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagttgaaatcagtggaactgctgctcaagtccaaacagcgcagcaactgatacagaat 120
Query: 1192 tttatggctgaagctgcgcaagcacaaccagcacaagcacagcctcaaacagttgggcct 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttatggctgaagctgcgcaagcacaaccagcacaagcacagcctcaaacagttgggcct 180
Query: 1252 cctgaccaaggatacaattcttaccctgctcatggttctgtctatacgtctccaccttcc 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctgaccaaggatacaattcttaccctgctcatggttctgtctatacgtctccaccttcc 240
Query: 1312 aatccaggacatgctggaggctatggctcagcttatggtgcaaactatgggtactaaact 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatccaggacatgctggaggctatggctcagcttatggtgcaaactatgggtactaaact 300
>gnl|LJGI|TC78117 similar to UniRef100_A7PUN7 Cluster: Chromosome chr7 scaffold_31,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr7 scaffold_31, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 670
Score = 77.8 bits (39), Expect = 2e-13
Identities = 168/211 (79%)
Strand = Plus / Plus
Query: 995 tcacacaacaaatgcaaattcctctgtcttatgctgatgctgttattggaactgctggag 1054
||||||| || ||||||||||| ||||| || || ||||||||||||||| | | ||||
Sbjct: 216 tcacacatcatatgcaaattcccctgtcatacgcagatgctgttattggagcatcaggag 275
Query: 1055 caagtataagctatatcagaagagctagtggggctactgttgccatacaagaaacaagag 1114
||| ||| ||||| || || | |||||||| || | | || | || |||||||| || |
Sbjct: 276 caaatattagctacattcgacgtgctagtggagcaagtattacaattcaagaaaccaggg 335
Query: 1115 gtgttcctggggagatgacagttgaaatcagtggaactgctgctcaagtccaaacagcgc 1174
|||| || ||||||||||| || || || ||||| |||||| ||||| | ||| |||| |
Sbjct: 336 gtgtgccaggggagatgaccgtagagataagtggtactgcttctcaaattcaagcagccc 395
Query: 1175 agcaactgatacagaattttatggctgaagc 1205
| || ||| | |||||||| |||||||||||
Sbjct: 396 aacagctggtccagaatttcatggctgaagc 426
>gnl|LJGI|TC58201 similar to UniRef100_A7QMQ0 Cluster: Chromosome undetermined
scaffold_127, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_127,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (20%)
Length = 828
Score = 63.9 bits (32), Expect = 2e-09
Identities = 140/176 (79%)
Strand = Plus / Plus
Query: 139 aagaaatggccggggtggcccggggagagtgtgttccgaatgctagttccggcgcacaag 198
||||| |||||||||||||| || |||| ||| ||| | ||| | ||||| ||||| |||
Sbjct: 549 aagaagtggccggggtggcctggagagaatgttttcaggatgttggttcctgcgcaaaag 608
Query: 199 gttgggggtataattggacgcaaaggagaatttattaagaaaattgtggaggagacgcga 258
||||| |||| ||||| || || || || ||||||||||||||| || |||||
Sbjct: 609 gttggcagtattattggccgtaagggcgagtttattaagaaaattactgaagagactaag 668
Query: 259 gctcgcgttaaaattcttgatggtcctccgggaactccagaaagggctgtaatggt 314
||||| |||| ||||| |||||||| || |||||| ||||||| || ||||||||
Sbjct: 669 gctcgtattaagattctcgatggtccacctggaactgcagaaagagcagtaatggt 724