Miyakogusa Predicted Gene

Lj1g3v4996190.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4996190.1 tr|B9MZB6|B9MZB6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_810462 PE=4
SV=1,82,2e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,NULL,CUFF.33909.1
         (319 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS352170 similar to UniRef100_A7QMQ3 Cluster: Chromosom...   278   2e-74
gnl|LJGI|TC68685 similar to UniRef100_A7PGQ5 Cluster: Chromosome...    50   8e-06

>gnl|LJGI|FS352170 similar to UniRef100_A7QMQ3 Cluster: Chromosome undetermined
           scaffold_127, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_127,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (25%)
          Length = 711

 Score =  278 bits (140), Expect = 2e-74
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                       
Query: 59  ggggtgcagctctgccaaccaatacacctggaattccttgtatctttgatccctttggaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggggtgcagctctgccaaccaatacacctggaattccttgtatctttgatccctttggaa 565

                                                                       
Query: 119 gggctgggatatgtggcgattggctgcttggttctaatatagaagcagcagtcttaagtg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gggctgggatatgtggcgattggctgcttggttctaatatagaagcagcagtcttaagtg 505

                               
Query: 179 gagttgctctagcaaaccat 198
           ||||||||||||||||||||
Sbjct: 504 gagttgctctagcaaaccat 485


>gnl|LJGI|TC68685 similar to UniRef100_A7PGQ5 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (38%)
          Length = 1055

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 90  aattccttgtatctttgatcccttt 114
           |||||||||||||||||||||||||
Sbjct: 652 aattccttgtatctttgatcccttt 628