Miyakogusa Predicted Gene

Lj1g3v4955430.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4955430.1 tr|B9I614|B9I614_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_241858
PE=4,38.46,0.00000000000001,DS_RBD,Double-stranded RNA-binding;
seg,NULL; Double-stranded RNA binding motif,Double-stranded
RNA-,CUFF.33717.1
         (1587 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO010826 homologue to UniRef100_A7Q5S5 Cluster: Chromos...   924   0.0  

>gnl|LJGI|GO010826 homologue to UniRef100_A7Q5S5 Cluster: Chromosome chr14
           scaffold_54, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (29%)
          Length = 684

 Score =  924 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtataagaaccggttgcaagaattggctcaaagaagctgttttaatctgccagcctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgtataagaaccggttgcaagaattggctcaaagaagctgttttaatctgccagcctat 180

                                                                       
Query: 61  tcatgcatccgcgaagggccagatcatgctcctcgtttcaaggcaactgtcaactttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcatgcatccgcgaagggccagatcatgctcctcgtttcaaggcaactgtcaactttaat 240

                                                                       
Query: 121 ggagaggcatttgaaagcccaacattttgctctactcttagacaggcagaacatgcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggagaggcatttgaaagcccaacattttgctctactcttagacaggcagaacatgcagca 300

                                                                       
Query: 181 gcagaggtagctcttaacacatttgcagaaagaggtccctccagagctttggcagcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcagaggtagctcttaacacatttgcagaaagaggtccctccagagctttggcagcaaga 360

                                                                       
Query: 241 gttctggatgaaacaggagtatacaagaacttgctccaggaaactgctcacagagctgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttctggatgaaacaggagtatacaagaacttgctccaggaaactgctcacagagctgga 420

                                                                       
Query: 301 ctgaatcttcctgtttatacaactattcgttctggaccaggtcatgttcctaactactca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgaatcttcctgtttatacaactattcgttctggaccaggtcatgttcctaactactca 480

                                                                       
Query: 361 tgtactgttgagattgctggaatgcattttactggagaccctgctaggaccaagaaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgtactgttgagattgctggaatgcattttactggagaccctgctaggaccaagaaacag 540

                                                         
Query: 421 gctcagaaaaatgctgcaatggctgcttggtctgcattgagaaaat 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gctcagaaaaatgctgcaatggctgcttggtctgcattgagaaaat 586