Miyakogusa Predicted Gene
- Lj1g3v4954920.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4954920.1 Non Chatacterized Hit- tr|I1NC11|I1NC11_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,71.72,0,HLH,Helix-loop-helix domain; seg,NULL; HLH,
helix-loop-helix DNA-binding domain,Helix-loop-helix dom,CUFF.33673.1
(1131 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73122 homologue to UniRef100_UPI0000162E7F Cluster: b... 912 0.0
gnl|LJGI|TC75292 similar to UniRef100_Q2HTN6 Cluster: Helix-loop... 232 4e-60
gnl|LJGI|TC73753 similar to UniRef100_A7PSE3 Cluster: Chromosome... 80 3e-14
gnl|LJGI|TC80943 similar to UniRef100_A7NUT0 Cluster: Chromosome... 68 1e-10
gnl|LJGI|TC76917 similar to UniRef100_A7NUT0 Cluster: Chromosome... 60 3e-08
>gnl|LJGI|TC73122 homologue to UniRef100_UPI0000162E7F Cluster: basic
helix-loop-helix (bHLH) family protein; n=1; Arabidopsis
thaliana|Rep: basic helix-loop-helix (bHLH) family
protein - Arabidopsis thaliana, partial (14%)
Length = 464
Score = 912 bits (460), Expect = 0.0
Identities = 463/464 (99%)
Strand = Plus / Plus
Query: 88 gcatcaaaatcctgtgcatgtgtgagaaaggtaagagccatggcattagaagcagtagtg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatcaaaatcctgtgcatgtgtgagaaaggtaagagccatggcattagaagcagtagtg 60
Query: 148 tatccacaaccacaagacccgtttggttatggaattaaagaccacaacttgttagcagat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatccacaaccacaagacccgtttggttatggaattaaagaccacaacttgttagcagat 120
Query: 208 gttgaattaagcaactggggctacgaggatttcaacttaaaccttgaaaatgaacaacaa 267
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 gttgaattaagcaactggggctacgaggatttcaacttaaaccttgaaaatgaagaacaa 180
Query: 268 caaggtggttctatttctatctgcagttttctcgagaaccaaacagaaaattacccttgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caaggtggttctatttctatctgcagttttctcgagaaccaaacagaaaattacccttgt 240
Query: 328 gtagattggagtccacaatccatggaagtggaactaccacacaagaatgagcagaacatg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtagattggagtccacaatccatggaagtggaactaccacacaagaatgagcagaacatg 300
Query: 388 tcaaatccatcttcagatgccagcaactgcaacactcacaacttagatagctcaacttca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaaatccatcttcagatgccagcaactgcaacactcacaacttagatagctcaacttca 360
Query: 448 accccttctcctcccaagaggcgcagagccagaagcagaaagaacaaggaagaaattgag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 accccttctcctcccaagaggcgcagagccagaagcagaaagaacaaggaagaaattgag 420
Query: 508 aaccagagaatgactcacattgctgtagagcgcaacagaagaaa 551
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaccagagaatgactcacattgctgtagagcgcaacagaagaaa 464
>gnl|LJGI|TC75292 similar to UniRef100_Q2HTN6 Cluster: Helix-loop-helix DNA-binding;
n=1; Medicago truncatula|Rep: Helix-loop-helix
DNA-binding - Medicago truncatula (Barrel medic),
partial (24%)
Length = 675
Score = 232 bits (117), Expect = 4e-60
Identities = 174/193 (90%)
Strand = Plus / Plus
Query: 463 aagaggcgcagagccagaagcagaaagaacaaggaagaaattgagaaccagagaatgact 522
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagaggcgcagagccagaagtagaaagaacaaggaagaaattgagaaccagagaatgact 540
Query: 523 cacattgctgtagagcgcaacagaagaaagcaattgaatgagtatctctctgttcttcgc 582
||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 541 cacattgctgtggagcgaaatagaagaaagcagatgaatgagtatctctctgttcttcgc 600
Query: 583 tcaatcatgcctgaatcttatgtcccaaggggtgatcaagcatcaattattgggggtgct 642
|| ||||||| ||||| || ||| ||||||||||||||| || || ||||| || |||
Sbjct: 601 tctctcatgccagaatcatacatccaaaggggtgatcaagcttctataattggaggggct 660
Query: 643 attaattttgtta 655
||||| |||||||
Sbjct: 661 attaactttgtta 673
Score = 56.0 bits (28), Expect = 5e-07
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 127 atggcattagaagcagtagtgtat---ccacaaccacaagacccgtttggttatggaatt 183
|||||| |||||||||| |||||| |||||| |||||||||| |||||||||||| |
Sbjct: 214 atggcactagaagcagtggtgtatgatccacaagcacaagacccttttggttatggattc 273
Query: 184 aaagac 189
||||||
Sbjct: 274 aaagac 279
>gnl|LJGI|TC73753 similar to UniRef100_A7PSE3 Cluster: Chromosome chr14 scaffold_27,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_27, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 521
Score = 79.8 bits (40), Expect = 3e-14
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 1046 gcaagctgggatcagtggatgagatagctgcagctatatatcaaatgctggataggattc 1105
||||| |||||||||||||||| |||||||||||| |||| || ||| ||||||||||||
Sbjct: 1 gcaagttgggatcagtggatgatatagctgcagctgtataccagatgttggataggattc 60
Query: 1106 aacaagag 1113
| ||||||
Sbjct: 61 accaagag 68
>gnl|LJGI|TC80943 similar to UniRef100_A7NUT0 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 770
Score = 67.9 bits (34), Expect = 1e-10
Identities = 130/162 (80%)
Strand = Plus / Plus
Query: 508 aaccagagaatgactcacattgctgtagagcgcaacagaagaaagcaattgaatgagtat 567
|||||||| |||||||||||||| || |||||||| |||| || || ||||||||||
Sbjct: 457 aaccagaggatgactcacattgcagttgagcgcaatcgaaggaaacagatgaatgagtac 516
Query: 568 ctctctgttcttcgctcaatcatgcctgaatcttatgtcccaaggggtgatcaagcatca 627
|| |||| || | || | |||||| |||||||| | ||||||||||||||| ||
Sbjct: 517 ctagctgtgctcagatccttgatgcctccttcttatgtacaaaggggtgatcaagcttct 576
Query: 628 attattgggggtgctattaattttgttaaggagcttgagcag 669
|| ||||| ||||| ||||| ||||| |||||||| ||||||
Sbjct: 577 atcattggaggtgccattaactttgtgaaggagctagagcag 618
>gnl|LJGI|TC76917 similar to UniRef100_A7NUT0 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 539
Score = 60.0 bits (30), Expect = 3e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 598 tcttatgtcccaaggggtgatcaagcatcaattattgggggtgctattaattttgttaag 657
|||||||| | ||||||||| ||||| || |||||||| ||||||||||| ||||| |||
Sbjct: 478 tcttatgttcaaaggggtgaccaagcgtctattattggaggtgctattaactttgtgaag 537
Query: 658 ga 659
||
Sbjct: 538 ga 539