Miyakogusa Predicted Gene

Lj1g3v4941820.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4941820.1 Non Chatacterized Hit- tr|F6HFJ4|F6HFJ4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,57.32,2e-18,seg,NULL; HMA, heavy metal-associated domain,Heavy
metal-associated domain, HMA; HMA,Heavy metal-ass,CUFF.34050.1
         (1458 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81735                                                      103   3e-21
gnl|LJGI|TC73299                                                      103   3e-21
gnl|LJGI|TC69377 similar to UniRef100_A7P2L3 Cluster: Chromosome...    88   2e-16

>gnl|LJGI|TC81735 
          Length = 873

 Score =  103 bits (52), Expect = 3e-21
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 36  ttgtattctcaaggttaatatccgctgtaaatgtgaaggctgtgagcacaaagtaaagaa 95
           ||||||||| ||| ||||||||| || |||||| |||||||||||||| |||||||||||
Sbjct: 124 ttgtattctgaagtttaatatccactttaaatgcgaaggctgtgagcagaaagtaaagaa 183

                               
Query: 96  actgctgcagaaagtcgatg 115
           ||||||||||||| ||||||
Sbjct: 184 actgctgcagaaaatcgatg 203


>gnl|LJGI|TC73299 
          Length = 1072

 Score =  103 bits (52), Expect = 3e-21
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 36  ttgtattctcaaggttaatatccgctgtaaatgtgaaggctgtgagcacaaagtaaagaa 95
           ||||||||| ||| ||||||||| || |||||| |||||||||||||| |||||||||||
Sbjct: 75  ttgtattctgaagtttaatatccactttaaatgcgaaggctgtgagcagaaagtaaagaa 134

                               
Query: 96  actgctgcagaaagtcgatg 115
           ||||||||||||| ||||||
Sbjct: 135 actgctgcagaaaatcgatg 154


>gnl|LJGI|TC69377 similar to UniRef100_A7P2L3 Cluster: Chromosome chr1 scaffold_5,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_5, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (8%)
          Length = 993

 Score = 87.7 bits (44), Expect = 2e-16
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                       
Query: 54  tatccgctgtaaatgtgaaggctgtgagcacaaagtaaagaaactgctgcagaaagtcga 113
           ||||| || ||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct: 338 tatccactttaaatgtgaaggctgtgagcagaaagtaaagaaactgctgcagaaaattga 397

               
Query: 114 tggg 117
           ||||
Sbjct: 398 tggg 401