Miyakogusa Predicted Gene
- Lj1g3v4885920.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4885920.1 tr|G7LBZ8|G7LBZ8_MEDTR Pre-mRNA-splicing factor
SF2 OS=Medicago truncatula GN=MTR_8g058530 PE=4 SV=1,89.68,0,seg,NULL;
RNA-binding domain, RBD,NULL; RNA recognition motif,RNA recognition
motif domain; RRM_1,RN,CUFF.33534.1
(951 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58662 similar to UniRef100_A7Q0B9 Cluster: Chromosome... 1409 0.0
gnl|LJGI|TC75886 similar to UniRef100_UPI0000E1E787 Cluster: PRE... 496 e-139
gnl|LJGI|FS354946 similar to UniRef100_Q28CC2 Cluster: Serine/ar... 361 5e-99
gnl|LJGI|DC598739 258 6e-68
gnl|LJGI|AV773237 similar to UniRef100_Q2QKB0 Cluster: Alternati... 240 1e-62
gnl|LJGI|TC67598 66 4e-10
gnl|LJGI|TC66764 similar to UniRef100_A8MR30 Cluster: Uncharacte... 58 1e-07
>gnl|LJGI|TC58662 similar to UniRef100_A7Q0B9 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (64%)
Length = 814
Score = 1409 bits (711), Expect = 0.0
Identities = 711/711 (100%)
Strand = Plus / Plus
Query: 1 atgagtaggcgtacgagcagaaccgtctacgttggaaatctacctggtgatatccgtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 atgagtaggcgtacgagcagaaccgtctacgttggaaatctacctggtgatatccgtgaa 163
Query: 61 agagaagttgaagatttgttctataagtatggaaacataactcatattgacctaaaggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 agagaagttgaagatttgttctataagtatggaaacataactcatattgacctaaaggtt 223
Query: 121 ccgccaaggcctcctggctatgcatttgtagagtttgaagacactcaagatgctgaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ccgccaaggcctcctggctatgcatttgtagagtttgaagacactcaagatgctgaggat 283
Query: 181 gcaattcgtgggcgcgatggttatgattttgatggtcaccgtttacgggtggagcttgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gcaattcgtgggcgcgatggttatgattttgatggtcaccgtttacgggtggagcttgct 343
Query: 241 catggtggacgtggtaattcatcttcaagagatcgatatagtagtcatagcagtggtcgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 catggtggacgtggtaattcatcttcaagagatcgatatagtagtcatagcagtggtcgt 403
Query: 301 ggtggacgtggagtgtccaggcgctctgaatatcgtgttctagtctctgggttgccctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggtggacgtggagtgtccaggcgctctgaatatcgtgttctagtctctgggttgccctct 463
Query: 361 tctgcatcctggcaggatcttaaggatcacatgcgaaaagcaggggatgtatgcttttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctgcatcctggcaggatcttaaggatcacatgcgaaaagcaggggatgtatgcttttcc 523
Query: 421 caagtttttcatgatggcaggggtactactggaattgtggattacaccaaccatgatgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caagtttttcatgatggcaggggtactactggaattgtggattacaccaaccatgatgat 583
Query: 481 atgaaatatgctgtcaagaagcttgatgactctgagttccgaaatgcattttcccggggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atgaaatatgctgtcaagaagcttgatgactctgagttccgaaatgcattttcccggggt 643
Query: 541 tatgttcgtgtgaggcaatatgattcgaggcgggactccagaagtcctagtggtggccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tatgttcgtgtgaggcaatatgattcgaggcgggactccagaagtcctagtggtggccca 703
Query: 601 tctcattctagaggaagaagctatagccgcagccgtagccgtagtcgtagttatagtcgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tctcattctagaggaagaagctatagccgcagccgtagccgtagtcgtagttatagtcgg 763
Query: 661 ggccgaagcgaaagcaaatctccaaagggtaaatcttcaccgcgttcgcct 711
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggccgaagcgaaagcaaatctccaaagggtaaatcttcaccgcgttcgcct 814
>gnl|LJGI|TC75886 similar to UniRef100_UPI0000E1E787 Cluster: PREDICTED: splicing
factor, arginine/serine-rich 4 isoform 3; n=1; Pan
troglodytes|Rep: PREDICTED: splicing factor,
arginine/serine-rich 4 isoform 3 - Pan troglodytes,
partial (13%)
Length = 548
Score = 496 bits (250), Expect = e-139
Identities = 279/286 (97%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 666 aagcgaaagcaaatctccaaagggtaaatcttcaccgcgttcgcctgctaaatctccagc 725
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 aagcgaaag-aaatctccgaagggtaa-tcttcaccgcgttcgcctgctaaatctccagc 58
Query: 726 aaaatctgcttctcgctcaagatcaaggtcccgctctttatcaggatcacggtcaaggtc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aaaatctgcttctcgctcaagatcaaggtcccgctctttatcaggatcacggtcaaggtc 118
Query: 786 caagtctccattgccattgcgtaacaaaagccccaagaggtgcagtgcaagccccataag 845
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 119 caagtctccattgccattgcgtaacaaaagcctcaagaggtgcagtgcaagccccataag 178
Query: 846 acgcagtgctagccccaaaagacgcagtcctagccccaaaaggcgcagtgctagcaggag 905
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 179 acgcagtgctagcccccaaagacgcagtcctagcccccaaaggcgcagtgctagcaggag 238
Query: 906 tccaagtaggagcaggagcaggagcaagagtttgtccaggtgagct 951
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 239 tccaagtaggagcaggagcaggagccagagtttgtccaggtgagct 284
>gnl|LJGI|FS354946 similar to UniRef100_Q28CC2 Cluster: Serine/arginine repetitive
matrix 1; n=1; Xenopus tropicalis|Rep: Serine/arginine
repetitive matrix 1 - Xenopus tropicalis (Western clawed
frog) (Silurana tropicalis), partial (4%)
Length = 576
Score = 361 bits (182), Expect = 5e-99
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 770 gatcacggtcaaggtccaagtctccattgccattgcgtaacaaaagccccaagaggtgca 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gatcacggtcaaggtccaagtctccattgccattgcgtaacaaaagccccaagaggtgca 342
Query: 830 gtgcaagccccataagacgcagtgctagccccaaaagacgcagtcctagccccaaaaggc 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtgcaagccccataagacgcagtgctagccccaaaagacgcagtcctagccccaaaaggc 282
Query: 890 gcagtgctagcaggagtccaagtaggagcaggagcaggagcaagagtttgtccaggtgag 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcagtgctagcaggagtccaagtaggagcaggagcaggagcaagagtttgtccaggtgag 222
Query: 950 ct 951
||
Sbjct: 221 ct 220
>gnl|LJGI|DC598739
Length = 240
Score = 258 bits (130), Expect = 6e-68
Identities = 162/173 (93%)
Strand = Plus / Plus
Query: 1 atgagtaggcgtacgagcagaaccgtctacgttggaaatctacctggtgatatccgtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 atgagtaggcgtacgagcagaaccgtctacgttggaaatctacctggtgatatccgtgaa 127
Query: 61 agagaagttgaagatttgttctataagtatggaaacataactcatattgacctaaaggtt 120
||| || |||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct: 128 agaaaanttgagggaggcggctatgagtatggaaacataactcatattgacctaaaggtt 187
Query: 121 ccgccaaggcctcctggctatgcatttgtagagtttgaagacactcaagatgc 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ccgccaaggcctcctggctatgcatttgtagagtttgaagacactcaagatgc 240
>gnl|LJGI|AV773237 similar to UniRef100_Q2QKB0 Cluster: Alternative splicing
regulator; n=1; Triticum aestivum|Rep: Alternative
splicing regulator - Triticum aestivum (Wheat), partial
(15%)
Length = 488
Score = 240 bits (121), Expect = 1e-62
Identities = 127/129 (98%)
Strand = Plus / Plus
Query: 1 atgagtaggcgtacgagcagaaccgtctacgttggaaatctacctggtgatatccgtgaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 78 atgagtaggcgtacgagcagaaccgtctacgttggaaatctagctggtgatatccgtgaa 137
Query: 61 agagaagttgaagatttgttctataagtatggaaacataactcatattgacctaaaggtt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 agagaagttgaggatttgttctataagtatggaaacataactcatattgacctaaaggtt 197
Query: 121 ccgccaagg 129
|||||||||
Sbjct: 198 ccgccaagg 206
>gnl|LJGI|TC67598
Length = 1494
Score = 65.9 bits (33), Expect = 4e-10
Identities = 183/233 (78%)
Strand = Plus / Plus
Query: 196 gatggttatgattttgatggtcaccgtttacgggtggagcttgctcatggtggacgtggt 255
||||||||||||||||||||| || ||||| || || ||||| ||||||||||| |||
Sbjct: 306 gatggttatgattttgatggttttcgattacgagttgaacttgcacatggtggacggggt 365
Query: 256 aattcatcttcaagagatcgatatagtagtcatagcagtggtcgtggtggacgtggagtg 315
|||||| ||| ||| || || |||||| |||| |||| | || | |||||||
Sbjct: 366 tcttcatcatcagtagaccgttacagtagttatagtggtggcagcagtagccgtggagct 425
Query: 316 tccaggcgctctgaatatcgtgttctagtctctgggttgccctcttctgcatcctggcag 375
|||||||| ||||| ||||||||||| || |||| || || ||||||| || |||||
Sbjct: 426 tccaggcgttctgactatcgtgttctggtgactggattacctccttctgcttcatggcaa 485
Query: 376 gatcttaaggatcacatgcgaaaagcaggggatgtatgcttttcccaagtttt 428
|| || || ||||||||||| ||||| || ||||| || || || ||||||||
Sbjct: 486 gacctgaaagatcacatgcgtaaagctggtgatgtgtgtttctctcaagtttt 538
>gnl|LJGI|TC66764 similar to UniRef100_A8MR30 Cluster: Uncharacterized protein
At3g49430.2; n=1; Arabidopsis thaliana|Rep:
Uncharacterized protein At3g49430.2 - Arabidopsis
thaliana (Mouse-ear cress), partial (79%)
Length = 1293
Score = 58.0 bits (29), Expect = 1e-07
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 358 tcttctgcatcctggcaggatcttaaggatcacatgcgaaaagcaggggatgt 410
||||||||||||||||| ||| | |||||||| ||||||||||| || |||||
Sbjct: 610 tcttctgcatcctggcaagatttgaaggatcatatgcgaaaagctggtgatgt 662