Miyakogusa Predicted Gene
- Lj1g3v4863140.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4863140.1 tr|A9SS49|A9SS49_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233966,32.38,5e-19,seg,NULL; Di19,Drought induced 19/
RING finger protein 114; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAM,CUFF.33487.1
(699 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63044 similar to UniRef100_A7Q8K7 Cluster: Chromosome... 1249 0.0
gnl|LJGI|GO033733 weakly similar to UniRef100_Q8GT87 Cluster: Fi... 571 e-162
gnl|LJGI|FS319454 weakly similar to UniRef100_Q7PKP4 Cluster: AG... 355 2e-97
gnl|LJGI|TC77183 similar to UniRef100_A5Z1Q2 Cluster: Fiber prot... 220 9e-57
>gnl|LJGI|TC63044 similar to UniRef100_A7Q8K7 Cluster: Chromosome chr5 scaffold_64,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_64, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 1192
Score = 1249 bits (630), Expect = 0.0
Identities = 676/699 (96%)
Strand = Plus / Plus
Query: 1 atgtcaatggaaggcgaggatttgagctttggtctctccactgcttctagaacccaccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 atgtcaatggaaggcgaggatttgagctttggtctctccactgcttctagaacccaccga 169
Query: 61 tcgaggctaaagtcacactttgagctctttgttgattttgaggaggatgaggtaattggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tcgaggctaaagtcacactttgagctctttgttgattttgaggaggatgaggtaattggg 229
Query: 121 nnnnnnnnnnnnnnnnnnnnnnngttaaggacggcttatccatgcccgttttgtgaagag 180
|||||||||||||||||||||||||||||||||||||
Sbjct: 230 gatgatgatgacgatgatgatgagttaaggacggcttatccatgcccgttttgtgaagag 289
Query: 181 gattttgatcttctagagctatgttgccatattgacttggaccatcaaatagaagccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gattttgatcttctagagctatgttgccatattgacttggaccatcaaatagaagccaag 349
Query: 241 tctggggtgcagctttgtcctgtttgtgccgtgtggataggggcaaatatggttgagcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tctggggtgcagctttgtcctgtttgtgccgtgtggataggggcaaatatggttgagcac 409
Query: 301 atagcagcacaacatggaaacatatttaagagtcaactcaaatcaaaacgccaccagcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atagcagcacaacatggaaacatatttaagagtcaactcaaatcaaaacgccaccagcat 469
Query: 361 gattcctacccaactctttccttttcaagaaaggatgaagaggatagacactgggaatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gattcctacccaactctttccttttcaagaaaggatgaagaggatagacactgggaatct 529
Query: 421 ttttatgctgggtcatctcctgtgacgtctacctccgagacagcgcgtgatccattgcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttttatgctgggtcatctcctgtgacgtctacctccgagacagcgcgtgatccattgcta 589
Query: 481 tcatttttatgtggtgcagctgctgctggtgaacaccaaaatgtgcagcctgattcttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcatttttatgtggtgcagctgctgctggtgaacaccaaaatgtgcagcctgattcttca 649
Query: 541 agtgaattaagcattgaagaaacacattcagatgatacagtgttagaaagagatgttgag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 agtgaattaagcattgaagaaacacattcagatgatacagtgttagaaagagatgttgag 709
Query: 601 ccatctttacccgacaaagaccgcatagagaaagctcggcgtagtaaatttgtacaggga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ccatctttacccgacaaagaccgcatagagaaagctcggcgtagtaaatttgtacaggga 769
Query: 661 cttttgatgtccactttccttgatcctgacttgtgatcg 699
|||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cttttgatgtccactttccttgatcctgacttgtgatcg 808
>gnl|LJGI|GO033733 weakly similar to UniRef100_Q8GT87 Cluster: Fiber protein Fb2; n=1;
Gossypium barbadense|Rep: Fiber protein Fb2 - Gossypium
barbadense (Sea-island cotton) (Egyptian cotton),
partial (19%)
Length = 645
Score = 571 bits (288), Expect = e-162
Identities = 288/288 (100%)
Strand = Plus / Plus
Query: 144 gttaaggacggcttatccatgcccgttttgtgaagaggattttgatcttctagagctatg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gttaaggacggcttatccatgcccgttttgtgaagaggattttgatcttctagagctatg 417
Query: 204 ttgccatattgacttggaccatcaaatagaagccaagtctggggtgcagctttgtcctgt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgccatattgacttggaccatcaaatagaagccaagtctggggtgcagctttgtcctgt 477
Query: 264 ttgtgccgtgtggataggggcaaatatggttgagcacatagcagcacaacatggaaacat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttgtgccgtgtggataggggcaaatatggttgagcacatagcagcacaacatggaaacat 537
Query: 324 atttaagagtcaactcaaatcaaaacgccaccagcatgattcctacccaactctttcctt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atttaagagtcaactcaaatcaaaacgccaccagcatgattcctacccaactctttcctt 597
Query: 384 ttcaagaaaggatgaagaggatagacactgggaatctttttatgctgg 431
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttcaagaaaggatgaagaggatagacactgggaatctttttatgctgg 645
Score = 155 bits (78), Expect = 4e-37
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1 atgtcaatggaaggcgaggatttgagctttggtctctccactgcttctagaacccaccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 atgtcaatggaaggcgaggatttgagctttggtctctccactgcttctagaacccaccga 171
Query: 61 tcgaggctaaagtcacactttg 82
|||||||||||||||| |||||
Sbjct: 172 tcgaggctaaagtcacgctttg 193
>gnl|LJGI|FS319454 weakly similar to UniRef100_Q7PKP4 Cluster: AGAP001451-PA; n=1;
Anopheles gambiae str. PEST|Rep: AGAP001451-PA -
Anopheles gambiae str. PEST, partial (5%)
Length = 700
Score = 355 bits (179), Expect = 2e-97
Identities = 225/248 (90%)
Strand = Plus / Plus
Query: 1 atgtcaatggaaggcgaggatttgagctttggtctctccactgcttctagaacccaccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 atgtcaatggaaggcgaggatttgagctttggtctctccactgcttctagaacccaccga 152
Query: 61 tcgaggctaaagtcacactttgagctctttgttgattttgaggaggatgaggtaattggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tcgaggctaaagtcacactttgagctctttgttgattttgaggaggatgaggtaattggg 212
Query: 121 nnnnnnnnnnnnnnnnnnnnnnngttaaggacggcttatccatgcccgttttgtgaagag 180
|||||||||||||||||||||||||||||||||||||
Sbjct: 213 gatgatgatgacgatgatgatgagttaaggacggcttatccatgcccgttttgtgaagag 272
Query: 181 gattttgatcttctagagctatgttgccatattgacttggaccatcaaatagaagccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gattttgatcttctagagctatgttgccatattgacttggaccatcaaatagaagccaag 332
Query: 241 tctggggt 248
||||||||
Sbjct: 333 tctggggt 340
>gnl|LJGI|TC77183 similar to UniRef100_A5Z1Q2 Cluster: Fiber protein Fb2; n=1;
Paeonia suffruticosa|Rep: Fiber protein Fb2 - Paeonia
suffruticosa (Tree peony), partial (64%)
Length = 975
Score = 220 bits (111), Expect = 9e-57
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 589 agagatgttgagccatctttacccgacaaagaccgcatagagaaagctcggcgtagtaaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agagatgttgagccatctttacccgacaaagaccgcatagagaaagctcggcgtagtaaa 796
Query: 649 tttgtacagggacttttgatgtccactttccttgatcctgacttgtgatcg 699
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tttgtacagggacttttgatgtccactttccttgatcctgacttgtgatcg 847