Miyakogusa Predicted Gene
- Lj1g3v4830220.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4830220.1 tr|G7KUM8|G7KUM8_MEDTR Polygalacturonase
OS=Medicago truncatula GN=MTR_7g110710 PE=4 SV=1,85.56,0,Pectin
lyase-like,Pectin lyase fold/virulence factor;
Glyco_hydro_28,Glycoside hydrolase, family 28;,CUFF.33371.1
(1473 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82010 similar to UniRef100_A7Q0Z0 Cluster: Chromosome... 1080 0.0
gnl|LJGI|GO021815 similar to UniRef100_A7Q0Z0 Cluster: Chromosom... 571 e-162
gnl|LJGI|GO026875 similar to UniRef100_A7Q0Z0 Cluster: Chromosom... 274 1e-72
gnl|LJGI|FS338105 88 2e-16
gnl|LJGI|TC72644 similar to UniRef100_A7Q0Z0 Cluster: Chromosome... 74 3e-12
gnl|LJGI|FS345102 similar to UniRef100_A7Q8H9 Cluster: Chromosom... 60 4e-08
gnl|LJGI|FS352975 58 2e-07
>gnl|LJGI|TC82010 similar to UniRef100_A7Q0Z0 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (36%)
Length = 545
Score = 1080 bits (545), Expect = 0.0
Identities = 545/545 (100%)
Strand = Plus / Plus
Query: 765 aaacacagatgggattgatccagattcttctgatgatgtatgcattgaagactgttatat 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacacagatgggattgatccagattcttctgatgatgtatgcattgaagactgttatat 60
Query: 825 aagcacaggtgatgatctaattgccatcaaaagtgggtgggacgagtatggaattgcata 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcacaggtgatgatctaattgccatcaaaagtgggtgggacgagtatggaattgcata 120
Query: 885 tggtcgtcccagcacaaacattgtcattcgcaggctcgttggaaaaactcaaacaagtgg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtcgtcccagcacaaacattgtcattcgcaggctcgttggaaaaactcaaacaagtgg 180
Query: 945 aattgctattggaagtgagatgtcgggcggcgtatcagaagttcacgcagaagatattca 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattgctattggaagtgagatgtcgggcggcgtatcagaagttcacgcagaagatattca 240
Query: 1005 cttttatgattcatataacgcaatcagaataaagacttctcgtggaaggggtggttatgt 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttttatgattcatataacgcaatcagaataaagacttctcgtggaaggggtggttatgt 300
Query: 1065 tagaaacatctacatctctaacatgaccttggttaatattgaatacgctattacgttcaa 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagaaacatctacatctctaacatgaccttggttaatattgaatacgctattacgttcaa 360
Query: 1125 tggtttatatggggaacatccagatgatgcttatgacccaaatgctctaccagtaataga 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggtttatatggggaacatccagatgatgcttatgacccaaatgctctaccagtaataga 420
Query: 1185 aaagattacaatcaaggatgtgataggagaaaatatcaaacaagcaggtattctagaggg 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaagattacaatcaaggatgtgataggagaaaatatcaaacaagcaggtattctagaggg 480
Query: 1245 tatagaaggtgataattttgtcaacatttgcctatcaaacatctccctcaatgtgagatc 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatagaaggtgataattttgtcaacatttgcctatcaaacatctccctcaatgtgagatc 540
Query: 1305 aagct 1309
|||||
Sbjct: 541 aagct 545
>gnl|LJGI|GO021815 similar to UniRef100_A7Q0Z0 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (39%)
Length = 787
Score = 571 bits (288), Expect = e-162
Identities = 546/628 (86%), Gaps = 3/628 (0%)
Strand = Plus / Plus
Query: 124 cttgcattgttctgttgtagcccatggacagtgtggagcagcacgctttgcaaaagaaaa 183
|||||||||||| ||||| ||||||||||||||||||||||| | ||||| | |
Sbjct: 130 cttgcattgttcagttgttgcccatggacagtgtggagcagctcaagctgcaatcagata 189
Query: 184 aacttggagagagttcgacctcacagtgtcagcattaccgaatttggcgcagttggggat 243
|||||| || |||||| || || |||| || ||||| |||||||| |||||||| |||
Sbjct: 190 aacttgaaggaagttcggccgcatagtgctagtattacagaatttggagcagttggcgat 249
Query: 244 gggatcactctcaacacaaaagcatttcagaatgccatcttctacctgaattcatttgca 303
|||||||||||||| || || ||||||||||||||||||||||| || ||||| ||| ||
Sbjct: 250 gggatcactctcaataccaaggcatttcagaatgccatcttctatctcaattccttttca 309
Query: 304 gataaaggtggagcaaagctttttgtccctgccggccggtggttaaccggtagttttgat 363
|| ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 310 gacaaaggtggagccaagctttttgtcccagctggccggtggttaaccggaagttttgat 369
Query: 364 ctcatcagccacctaactctgtggttggataaggatgcagtgattcttggatcaacgaac 423
|| ||||||||||| ||| ||||||| || |||||||| || ||||||||||||||||||
Sbjct: 370 ctaatcagccacctcactttgtggttagacaaggatgctgtaattcttggatcaacgaac 429
Query: 424 tctgatgattggccagttgttgatcctctaccgtcttacggtcgaggaagggagttgcct 483
|||||||||||||||||||| ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 430 tctgatgattggccagttgtggatcccctaccatcatatggtcgtggaagggagttgccg 489
Query: 484 ggtggaaggcataagagcctcatttatggccacaatttgactgatgttgtcataacaggt 543
||||||||||||| ||||||||||| || | ||||||||||||||| | |||||||||
Sbjct: 490 ggtggaaggcatagaagcctcatttacggacgcaatttgactgatgtcattataacaggt 549
Query: 544 aataatggaactatcgatggtcaagggagtatctggtggagcaggtttcagaacaatact 603
|||||||||||||| |||||||||||||||||||||||||||| ||| |||| || ||
Sbjct: 550 aataatggaactatagatggtcaagggagtatctggtggagcaaatttgagaataaaaca 609
Query: 604 ctggattatacacgtccccatttggtggaattgatgaattccataggagttctcatttca 663
|||||||||||||||| ||| |||| || |||||||||| || |||||||||||||||
Sbjct: 610 ttggattatacacgtcctcatctggttgagttgatgaatt-caacggagttctcatttca 668
Query: 664 aatttaacattcttgaattctccattttggaatattcatcctgtatattgcagccaagta 723
|| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct: 669 aacttaaccttcttgaattcaccattttggactattcatcctgtatattgcagccatgtt 728
Query: 724 agagttcagaatgtcacaatccttgctc 751
| ||||||| ||||||| ||||||||||
Sbjct: 729 acagttcag-atgtcac-atccttgctc 754
>gnl|LJGI|GO026875 similar to UniRef100_A7Q0Z0 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (38%)
Length = 857
Score = 274 bits (138), Expect = 1e-72
Identities = 390/474 (82%)
Strand = Plus / Minus
Query: 943 ggaattgctattggaagtgagatgtcgggcggcgtatcagaagttcacgcagaagatatt 1002
||||| ||||| |||||||||||||| || || || |||||||| || ||||||||||||
Sbjct: 829 ggaatcgctatcggaagtgagatgtctggaggtgtgtcagaagtccatgcagaagatatt 770
Query: 1003 cacttttatgattcatataacgcaatcagaataaagacttctcgtggaaggggtggttat 1062
| ||| |||||| | |||||||||||| |||||||||| ||| ||||||||||||
Sbjct: 769 tatatttttgattcgcgcagcgcaatcagaattaagacttctcctggcaggggtggttat 710
Query: 1063 gttagaaacatctacatctctaacatgaccttggttaatattgaatacgctattacgttc 1122
|||||||| |||| ||||||||||||||||||| |||||| || ||||| | ||||
Sbjct: 709 gttagaaatgtctatatctctaacatgaccttggctaatatagatattgctatcaggttc 650
Query: 1123 aatggtttatatggggaacatccagatgatgcttatgacccaaatgctctaccagtaata 1182
| |||||||||||| |||||||||||||| ||||||||||| | || ||||| ||||
Sbjct: 649 actggtttatatggagaacatccagatgaagcttatgacccggacgccctacctctaatt 590
Query: 1183 gaaaagattacaatcaaggatgtgataggagaaaatatcaaacaagcaggtattctagag 1242
|||| ||||| ||||||||||||||||| |||||| |||||| || || || || ||
Sbjct: 589 gaaagaattactatcaaggatgtgataggggaaaatgtcaaacgcgccggccttatacag 530
Query: 1243 ggtatagaaggtgataattttgtcaacatttgcctatcaaacatctccctcaatgtgaga 1302
|| ||| ||||| || | |||||||| || || ||||| ||||| ||| ||||||||
Sbjct: 529 ggcataaaaggttatgactttgtcaatatctgtctatctaacattagccttaatgtgagc 470
Query: 1303 tcaagctttccatggaactgctcttatgttaaaggatactctgacatggttcacccagaa 1362
|||| ||||||||||||||||| | |||||||||||||| ||| ||||| || |||
Sbjct: 469 tcaaaagttccatggaactgctctgacgttaaaggatactcagacttggtttcgccggaa 410
Query: 1363 gcttgtgagcctctcatggagagactattccctgagcattgttcagactgttac 1416
| |||||| ||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct: 409 gtttgtgaacctctcaaagagagaatattccctgagcattggtcagactgttac 356
>gnl|LJGI|FS338105
Length = 691
Score = 87.7 bits (44), Expect = 2e-16
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 995 aagatattcacttttatgattcatataacgcaatcagaataaaga--cttctcgtggaag 1052
|||||||||||||||| || |||||||| || |||||| |||||| |||||| ||||||
Sbjct: 440 aagatattcacttttacgagtcatataatgccatcagattaaagagacttctcctggaag 499
Query: 1053 gggtggttatgttagaaacatct 1075
|||||||||||||| ||||||||
Sbjct: 500 gggtggttatgttataaacatct 522
Score = 65.9 bits (33), Expect = 7e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 254 tcaacacaaaagcatttcagaatgccatcttctacct 290
|||||||||||||||||||||||| ||||||||||||
Sbjct: 392 tcaacacaaaagcatttcagaatgtcatcttctacct 428
>gnl|LJGI|TC72644 similar to UniRef100_A7Q0Z0 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 612
Score = 73.8 bits (37), Expect = 3e-12
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 998 atattcacttttatgattcatataacgcaatcagaataaaga--cttctcgtggaagggg 1055
||||||||||||| || ||||| || || |||||| |||||| |||||| |||||||||
Sbjct: 336 atattcacttttacgagtcatacaatgccatcagattaaagagacttctcctggaagggg 395
Query: 1056 tggttatgttagaaacatct 1075
||||||||||| ||||||||
Sbjct: 396 tggttatgttataaacatct 415
>gnl|LJGI|FS345102 similar to UniRef100_A7Q8H9 Cluster: Chromosome chr5 scaffold_64,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_64, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 636
Score = 60.0 bits (30), Expect = 4e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 526 gatgttgtcataacaggtaataatggaactatcgatgg 563
||||||||||||||||||||||||||||| || |||||
Sbjct: 563 gatgttgtcataacaggtaataatggaaccattgatgg 600
>gnl|LJGI|FS352975
Length = 731
Score = 58.0 bits (29), Expect = 2e-07
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 254 tcaacacaaaagcatttcagaatgccatcttctacct 290
|||||||||||||||||| ||||| ||||||||||||
Sbjct: 263 tcaacacaaaagcatttccgaatgtcatcttctacct 227