Miyakogusa Predicted Gene

Lj1g3v4830100.3

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4830100.3 tr|A8IDN7|A8IDN7_CHLRE Pre-mRNA splicing factor
PRP38 family protein OS=Chlamydomonas reinhardtii
GN,52.81,8e-19,PRP38,Pre-mRNA-splicing factor 38;
UNCHARACTERIZED,Pre-mRNA-splicing factor 38,CUFF.33367.3
         (265 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62380 similar to UniRef100_A7PYY5 Cluster: Chromosome...   391   e-108
gnl|LJGI|BP043682 homologue to UniRef100_A7PYY5 Cluster: Chromos...   385   e-106

>gnl|LJGI|TC62380 similar to UniRef100_A7PYY5 Cluster: Chromosome chr4 scaffold_39,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_39, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (56%)
          Length = 772

 Score =  391 bits (197), Expect = e-108
 Identities = 248/265 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagatacagacttctggcaggccaattgggtccttgctagagaaagtcctttgtatg 60
           |||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||| |||
Sbjct: 140 atggagatacagacgtctggcaggccgattgagtccttgcttgagaaagttctttgcatg 199

                                                                       
Query: 61  attattctgtcatccgattacttcaaggagctctatcgcttaaaaacataccatgaagtt 120
           | ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 200 aatattctgtcgtctgattacttcaaggagctccatcgcttaaaaacataccatgaagtt 259

                                                                       
Query: 121 attgatgagatctacaatcaagttgatcacgtggaaccatggatgacggggaattgtcgt 180
           ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 260 attgatgagatctacaatcaagttgatcatgtggaaccgtggatgacggggaattgtcgt 319

                                                                       
Query: 181 ggtccttcaacttctttctgtcttctttacaagttctttacaatgaagctcactgtcaaa 240
           |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct: 320 ggtccttcgacttctttctgccttctctacaagttctttacgatgaagctcactgtcaaa 379

                                    
Query: 241 caaatgcacgggctattgaaacacc 265
           |||||||||||||| ||||||||||
Sbjct: 380 caaatgcacgggctgttgaaacacc 404


>gnl|LJGI|BP043682 homologue to UniRef100_A7PYY5 Cluster: Chromosome chr4 scaffold_39,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_39, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (20%)
          Length = 499

 Score =  385 bits (194), Expect = e-106
 Identities = 218/226 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagatacagacttctggcaggccaattgggtccttgctagagaaagtcctttgtatg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 272 atggagatacagacttctggcaggccaattgagtccttgctagagaaagtcctttgtatg 331

                                                                       
Query: 61  attattctgtcatccgattacttcaaggagctctatcgcttaaaaacataccatgaagtt 120
           | |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 332 aatattctgtcatctgattacttcaaggagctctatcgcttaaaaacataccttgaagtt 391

                                                                       
Query: 121 attgatgagatctacaatcaagttgatcacgtggaaccatggatgacggggaattgtcgt 180
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 392 attgatgagatctacaatcaagttgatcatgtggaaccatggatggcggggaattgtcgt 451

                                                         
Query: 181 ggtccttcaacttctttctgtcttctttacaagttctttacaatga 226
           ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 452 ggtccttcaacttttttctgtcttctttactagttctttacaatga 497