Miyakogusa Predicted Gene
- Lj1g3v4765230.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4765230.1 tr|B9MZM0|B9MZM0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_595514 PE=4
SV=1,35.79,1e-17,seg,NULL; ZF_C3H1,Zinc finger, CCCH-type; no
description,NULL; Frigida,Frigida-like; zf-CCCH,Zinc fi,CUFF.33215.1
(1047 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63372 1263 0.0
gnl|LJGI|GO024999 UniRef100_Q3LX78 Cluster: Envelope glycoprotei... 176 2e-43
gnl|LJGI|TC66034 149 4e-35
gnl|LJGI|AV407697 similar to UniRef100_A9V3R0 Cluster: Predicted... 64 2e-09
gnl|LJGI|AV778010 54 2e-06
>gnl|LJGI|TC63372
Length = 728
Score = 1263 bits (637), Expect = 0.0
Identities = 686/710 (96%)
Strand = Plus / Plus
Query: 338 gctctggtttcattcagaaccttgttaagaagcagcaacatattgaagctgttagattca 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctctggtttcattcagaaccttgttaagaagcagcaacatattgaagctgttagattca 60
Query: 398 tttgtgcatttaaattagctgacaagaatcaacctgtcgatctcttgtggaaatacatgc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttgtgcatttaaattagctgacaagaatcaacctgtcgatctcttgtggaaatacatgc 120
Query: 458 agaatgcaaaactggtttctgagaacaccacctcccttgaaatccaggataaggccagag 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaatgcaaaactggtttctgagaacaccacctcccttgaaatccaggataaggccagag 180
Query: 518 atcaagaagttgccactttgacaaatgttctactgtccatttcagacaacaagttagaat 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcaagaagttgccactttgacaaatgttctactgtccatttcagacaacaagttagaat 240
Query: 578 ctgtgggtctacttaatgagattcgagatcgcattcttgagctaattaggcgaaatgtca 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgtgggtctacttaatgagattcgagatcgcattcttgagctaattaggcgaaatgtca 300
Query: 638 gtagtgtttgcactggcacctggtccatcctcaaaatgtgcaacaccctaaggaaaagaa 697
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtagtgtttgcactggcacttggtccatcctcaaaatgtgcaacaccctaaggaaaagaa 360
Query: 698 atgtggatcctaaatgtggaaggagaaggagaatggagccctctgagtccaagtcagctg 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgtggatcctaaatgtggaaggagaaggagaatggagccctctgagtccaagtcagctg 420
Query: 758 ctgcagtttccaatggtgaagtcccnnnnnnnnnnnnnnnnnnnnnnntgagaagttctg 817
||||||||||||||||||||||||| ||||||||||||
Sbjct: 421 ctgcagtttccaatggtgaagtcccacaacaacaacaacaacaacaactgagaagttctg 480
Query: 818 agccttctccccttgcgaaggagggcgcacttggtggagagcttcggaacaagttggatt 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agccttctccccttgcgaaggagggcgcacttggtggagagcttcggaacaagttggatt 540
Query: 878 tcaagggtgcggatgaaggggaatctagtgaagggtgtgctgaagattgtatgatgtatt 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaagggtgcggatgaaggggaatctagtgaagggtgtgctgaagattgtatgatgtatt 600
Query: 938 tgaagactgggagttgcaggtttggatccagttgcatgtttaaccattccattaggagca 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgaagactgggagttgcaggtttggatccagttgcatgtttaaccattccattaggagca 660
Query: 998 ggatcgtgtacgttaggcaattgcctctaataaaaaagtacgtttgagac 1047
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggatcgtgtacgttaggcaattgcctctaataaaaaagtacgtttgagac 710
>gnl|LJGI|GO024999 UniRef100_Q3LX78 Cluster: Envelope glycoprotein; n=1; Human
immunodeficiency virus 1|Rep: Envelope glycoprotein -
Human immunodeficiency virus 1, partial (8%)
Length = 687
Score = 176 bits (89), Expect = 2e-43
Identities = 191/225 (84%)
Strand = Plus / Plus
Query: 479 agaacaccacctcccttgaaatccaggataaggccagagatcaagaagttgccactttga 538
||||||||| ||||||||||||| ||||||||| ||||||||||||| | || |||||||
Sbjct: 101 agaacaccaactcccttgaaatcaaggataaggtcagagatcaagaaatggcaactttga 160
Query: 539 caaatgttctactgtccatttcagacaacaagttagaatctgtgggtctacttaatgaga 598
||||||||||| || ||||||||||||||| ||||||||| || |||| |||||||||
Sbjct: 161 caaatgttctagagtgcatttcagacaacaacctagaatctggggatctaattaatgaga 220
Query: 599 ttcgagatcgcattcttgagctaattaggcgaaatgtcagtagtgtttgcactggcacct 658
|| |||||||||||||||||||| || || || || ||||| ||||| ||| |||||
Sbjct: 221 ttgaagatcgcattcttgagctaagtaagcagaaggtaagtagcgtttgtactcgcacca 280
Query: 659 ggtccatcctcaaaatgtgcaacaccctaaggaaaagaaatgtgg 703
|||||||| || ||| |||||||| ||| | | ||||| ||||||
Sbjct: 281 ggtccatcatccaaaagtgcaacaacctgaaggaaagagatgtgg 325
>gnl|LJGI|TC66034
Length = 677
Score = 149 bits (75), Expect = 4e-35
Identities = 239/296 (80%), Gaps = 12/296 (4%)
Strand = Plus / Plus
Query: 329 cagacaaaagctctggtttcattcagaaccttgttaagaagcagcaacatattgaagctg 388
|||||||| ||||| ||| |||||| |||| |||||||| || | || |||||||||
Sbjct: 18 cagacaaagtctctgattttgttcagagccttattaagaaggagtagtattttgaagctg 77
Query: 389 ttagattcatttgtgcatttaaattagctgacaagaatcaacctgtcgatctcttgtgga 448
|||||||||||||||||||||| || | ||||||||||||||||| ||||||||| |||
Sbjct: 78 ttagattcatttgtgcatttaagttggaagacaagaatcaacctgttgatctcttgcgga 137
Query: 449 aatacatgcagaatgcaaaactggtttctg------------agaacaccacctcccttg 496
||||| |||||||||||||||| |||||| ||||||||| || ||||
Sbjct: 138 aatacgcgcagaatgcaaaactgatttctgggcgcatttgcaagaacaccatgtctcttg 197
Query: 497 aaatccaggataaggccagagatcaagaagttgccactttgacaaatgttctactgtcca 556
||||| ||||| | ||||||||||||||| |||| | ||| || ||||| || | ||
Sbjct: 198 aaatcaaggatgatgccagagatcaagaaattgctagcctgaaaagtgttcaacaatgca 257
Query: 557 tttcagacaacaagttagaatctgtgggtctacttaatgagattcgagatcgcatt 612
||||||||||||| ||||||||| || |||| |||||||||||| | ||||||||
Sbjct: 258 tttcagacaacaatctagaatctgaggatctaattaatgagattcaacatcgcatt 313
>gnl|LJGI|AV407697 similar to UniRef100_A9V3R0 Cluster: Predicted protein; n=1;
Monosiga brevicollis MX1|Rep: Predicted protein -
Monosiga brevicollis MX1, partial (4%)
Length = 395
Score = 63.9 bits (32), Expect = 2e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 843 cgcacttggtggagagcttcggaacaagttggatttcaagggtgcggatgaagggg 898
|||||||||||||||| ||| ||||||| ||||||| ||||||| |||||| ||||
Sbjct: 189 cgcacttggtggagagtttcagaacaagctggatttgaagggtgaggatgatgggg 244
>gnl|LJGI|AV778010
Length = 313
Score = 54.0 bits (27), Expect = 2e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 671 aaatgtgcaacaccctaaggaaaagaaatgt 701
|||||||||||| ||||||||||||||||||
Sbjct: 307 aaatgtgcaacaacctaaggaaaagaaatgt 277