Miyakogusa Predicted Gene

Lj1g3v4752940.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4752940.3 Non Chatacterized Hit- tr|D8T3B2|D8T3B2_SELML
Putative uncharacterized protein OS=Selaginella moelle,40.83,5e-18,Bet
v1-like,NULL; seg,NULL; no description,START-like domain,CUFF.33129.3
         (1311 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS354819                                                     194   1e-48
gnl|LJGI|FS328490 weakly similar to UniRef100_Q2R2E6 Cluster: Ex...   115   7e-25
gnl|LJGI|BW598623 similar to UniRef100_Q9FNG4 Cluster: Gb|AAF231...    60   4e-08
gnl|LJGI|TC70679                                                       60   4e-08

>gnl|LJGI|FS354819 
          Length = 215

 Score =  194 bits (98), Expect = 1e-48
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1193 attcattttctatgaaaaatgaggcaacactgaaccagacaacaagtggtagcaaccaat 1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215  attcattttctatgaaaaatgaggcaacactgaaccagacaacaagtggtagcaaccaat 156

                                                  
Query: 1253 tagacattgatgcaatccaagatatgtctttagatgac 1290
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 155  tagacattgatgcaatccaagatatgtctttagatgac 118


>gnl|LJGI|FS328490 weakly similar to UniRef100_Q2R2E6 Cluster: Expressed protein; n=2;
           Oryza sativa Japonica Group|Rep: Expressed protein -
           Oryza sativa subsp. japonica (Rice), partial (26%)
          Length = 662

 Score =  115 bits (58), Expect = 7e-25
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                     
Query: 1   atgaaggttccgtggccgctgtcaaagagggaggctatagtgcactattatctggttg 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atgaaggttccgtggccgctgtcaaagagggaggctatagtgcactattatctggttg 662


>gnl|LJGI|BW598623 similar to UniRef100_Q9FNG4 Cluster: Gb|AAF23188.1; n=1;
           Arabidopsis thaliana|Rep: Gb|AAF23188.1 - Arabidopsis
           thaliana (Mouse-ear cress), partial (5%)
          Length = 459

 Score = 60.0 bits (30), Expect = 4e-08
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 190 gtgggaggttatgttttgcaaaaggtgacctcagaaagaagttactttcg 239
           |||||||| | || ||| ||||||||||| ||||||||||||||||||||
Sbjct: 85  gtgggaggctttgctttacaaaaggtgacatcagaaagaagttactttcg 134


>gnl|LJGI|TC70679 
          Length = 835

 Score = 60.0 bits (30), Expect = 4e-08
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 854 aggctctagaaactctagagaaggccatttcaatggtt 891
           ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 85  aggctctagaaacactagataaggccatttcaatggtt 122