Miyakogusa Predicted Gene
- Lj1g3v4752650.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4752650.1 tr|A9TLQ3|A9TLQ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_147462,41.41,0.00000000000005,RNA recognition motif,RNA
recognition motif domain; RRM_1,RNA recognition motif domain;
SUBFAMILY NO,CUFF.33079.1
(963 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65735 similar to UniRef100_A7QQW1 Cluster: Chromosome... 1068 0.0
gnl|LJGI|TC74064 weakly similar to UniRef100_A7QQW1 Cluster: Chr... 589 e-167
gnl|LJGI|TC73837 weakly similar to UniRef100_A7QQW1 Cluster: Chr... 82 7e-15
>gnl|LJGI|TC65735 similar to UniRef100_A7QQW1 Cluster: Chromosome undetermined
scaffold_145, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_145,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (23%)
Length = 654
Score = 1068 bits (539), Expect = 0.0
Identities = 539/539 (100%)
Strand = Plus / Plus
Query: 1 atggcttctacaacctctgtttcctcttctatctgcaacagaatctacaacctctccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 atggcttctacaacctctgtttcctcttctatctgcaacagaatctacaacctctccttc 170
Query: 61 aaacattcttcccttgcactcacctgcaacttctctcaaagacccatatctcaaaaagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 aaacattcttcccttgcactcacctgcaacttctctcaaagacccatatctcaaaaagcc 230
Query: 121 ttcaatctcaacctcaagttccaaagttttattctttccccactttcacttcaccgtctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttcaatctcaacctcaagttccaaagttttattctttccccactttcacttcaccgtctt 290
Query: 181 cacccaccatctgcttccactgatgaatttgaagtggctcaagacagcacagattcccga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cacccaccatctgcttccactgatgaatttgaagtggctcaagacagcacagattcccga 350
Query: 241 caagacaacccagaaccagaaccagaaacagaaacctctgataaaccacaacaagaggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 caagacaacccagaaccagaaccagaaacagaaacctctgataaaccacaacaagaggaa 410
Query: 301 gagcagaaggtatcaacttccagtgatgataggaggctctatgttggaaacttgccatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gagcagaaggtatcaacttccagtgatgataggaggctctatgttggaaacttgccatat 470
Query: 361 tcaatgacttcttcgcaattgactgagatctttgtagaagctggcactgtggtgtctgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcaatgacttcttcgcaattgactgagatctttgtagaagctggcactgtggtgtctgtt 530
Query: 421 gaggtaatgtacgatcgagtcacggataggagcagaggatttgcatttgttacaatgggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gaggtaatgtacgatcgagtcacggataggagcagaggatttgcatttgttacaatgggg 590
Query: 481 agtgttgatgatgctaaagaagcaattcgaatgtttgatggctctcaagttggtggtag 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agtgttgatgatgctaaagaagcaattcgaatgtttgatggctctcaagttggtggtag 649
>gnl|LJGI|TC74064 weakly similar to UniRef100_A7QQW1 Cluster: Chromosome undetermined
scaffold_145, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_145,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (22%)
Length = 524
Score = 589 bits (297), Expect = e-167
Identities = 300/301 (99%)
Strand = Plus / Plus
Query: 663 tggctggagagtgagctctcaggatcttaaagatgttttcgctgagcagcctggcttagt 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctggagagtgagctctcaggatcttaaagatgttttcgctgagcagcctggcttagt 60
Query: 723 cagtgccaaggtcatctatgagagagacagtggaaggtctcgaggttttgggtttgtcac 782
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 cagtgccaaggtcatctatgagagagaccgtggaaggtctcgaggttttgggtttgtcac 120
Query: 783 tttcgaaactgctcaagatgtagaagctgctttgaaaactatgaatggtgtggaggttca 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttcgaaactgctcaagatgtagaagctgctttgaaaactatgaatggtgtggaggttca 180
Query: 843 aggtcgggaattgcgattgaacttggctgctgtaaaggcaccttcatctccttcagtaac 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtcgggaattgcgattgaacttggctgctgtaaaggcaccttcatctccttcagtaac 240
Query: 903 tgaggaaaatgaaggaagtagtgttgatacctctgaattggtgtctagtgccagcacatg 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaggaaaatgaaggaagtagtgttgatacctctgaattggtgtctagtgccagcacatg 300
Query: 963 a 963
|
Sbjct: 301 a 301
>gnl|LJGI|TC73837 weakly similar to UniRef100_A7QQW1 Cluster: Chromosome undetermined
scaffold_145, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_145,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (21%)
Length = 571
Score = 81.8 bits (41), Expect = 7e-15
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 442 acggataggagcagaggatttgcatttgttacaatggggagtgttgatgatgctaaagaa 501
|||||||| |||||||||||||| || ||||| ||||||||||| || ||||| || ||
Sbjct: 168 acggatagaagcagaggatttgcgttcgttacgatggggagtgtggagaatgctgaacaa 109
Query: 502 gcaattcgaatgtttgatggc 522
||||||| |||||||||||||
Sbjct: 108 gcaattcaaatgtttgatggc 88