Miyakogusa Predicted Gene

Lj1g3v4717500.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj1g3v4717500.2 Non Chatacterized Hit- tr|B9FQY8|B9FQY8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,40.51,3e-17,seg,NULL; RNA recognition motif,RNA recognition
motif domain, eukaryote; RNA recognition motif,RNA r,CUFF.33106.2
         (2865 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC82005 similar to UniRef100_A7QFA8 Cluster: Chromosome...   638   0.0  
gnl|LJGI|GO020464 similar to UniRef100_A7QFA8 Cluster: Chromosom...   502   e-141
gnl|LJGI|AV417593 similar to UniRef100_A7QFA8 Cluster: Chromosom...    76   1e-12

>gnl|LJGI|TC82005 similar to UniRef100_A7QFA8 Cluster: Chromosome undetermined
            scaffold_87, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_87, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (31%)
          Length = 829

 Score =  638 bits (322), Expect = 0.0
 Identities = 341/346 (98%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1174 aagctgtttgaacatcatggaaagatcacaaaagtggttctccctcctgctaaatctgga 1233
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 1    aagctgtttgaacatcatggaaagatcacaaaagtggttctccctc-tgctaaagctgga 59

                                                                        
Query: 1234 caagaaaagagcagatttggttttgtgcatttttctgataggtcaagtgccatgaaggca 1293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   caagaaaagagcagatttggttttgtgcatttttctgataggtcaagtgccatgaaggca 119

                                                                        
Query: 1294 ttgaagaatacagagaaatatgaaattgatggcaaaaatttggaatgttcacttgctaag 1353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  ttgaagaatacagagaaatatgaaattgatggcaaaaatttggaatgttcacttgctaag 179

                                                                        
Query: 1354 ccggaggctgatcaaaggtcgtccggcacatcaaattcacagaagccagtcgtacttccc 1413
            ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  ccgcaggctgaccaaaggtcgtccggcacatcaaattcacagaagccagtcgtacttccc 239

                                                                        
Query: 1414 acgtatccacatcgtcttggttatggtatggttggaggtgcatatggtggcatcggtgca 1473
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  acttatccacatcgtcttggttatggtatggttggaggtgcatatggtggcatcggtgca 299

                                                          
Query: 1474 ggatacggtgctgctggctttgcacaaccacttatgtatggtatgg 1519
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  ggatacggtgctgctggctttgcacaaccacttatgtatggtatgg 345


>gnl|LJGI|GO020464 similar to UniRef100_A7QFA8 Cluster: Chromosome undetermined
           scaffold_87, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_87, whole
           genome shotgun sequence - Vitis vinifera (Grape),
           partial (22%)
          Length = 617

 Score =  502 bits (253), Expect = e-141
 Identities = 271/277 (97%)
 Strand = Plus / Plus

                                                                       
Query: 519 agagatgagattcaatcatactaatgatgaggttgagaaaaagaaacatgctgagctact 578
           |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agagatgagagtagatcatactaatgatgaggttgagaaaaagaaacatgctgagctact 400

                                                                       
Query: 579 tgcacttccacctcatagttcagaggtctacattgggggcattgctaacaatgtttctga 638
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 401 tgcacttccacctcatggttcagaggtctacattgggggtattgctaacaatgtttctga 460

                                                                       
Query: 639 agaagatttgagagtcttttgtcaatctgttggagaagtgtcagaggtaagaattatgaa 698
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agaagatttgagagtcttttgtcaatctgttggagaagtgtcagaggtaagaattatgaa 520

                                                                       
Query: 699 ggcgaaagaatccggtgaaagaaaaggttatgcttttgtggccttcaagacaaaggaatt 758
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggcgaaagaatccggtgaaggaaaaggttatgcttttgtggccttcaagacaaaggaatt 580

                                                
Query: 759 ggcctcccaggctattgaggaactgaacaactctgaa 795
           |||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggcctcccaggctattgaggaactgaacaactctgaa 617


>gnl|LJGI|AV417593 similar to UniRef100_A7QFA8 Cluster: Chromosome undetermined
            scaffold_87, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_87, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (31%)
          Length = 423

 Score = 75.8 bits (38), Expect = 1e-12
 Identities = 80/94 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1173 gaagctgtttgaacatcatggaaagatcacaaaagtggttctccctcctgctaaatctgg 1232
            |||||| |||||||| ||||| ||||||||||| ||||||||||| ||  | || |||||
Sbjct: 307  gaagctttttgaacaccatgggaagatcacaaaggtggttctcccaccaccaaagtctgg 366

                                              
Query: 1233 acaagaaaagagcagatttggttttgtgcatttt 1266
            ||| |||||||  ||| | |||||||||||||||
Sbjct: 367  acaggaaaagaatagaatcggttttgtgcatttt 400