Miyakogusa Predicted Gene
- Lj1g3v4717440.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4717440.1 tr|G7KQW9|G7KQW9_MEDTR Signal recognition
particle 54 kDa protein OS=Medicago truncatula
GN=MTR_7g10,90.06,0,SRP54,Signal recognition particle, SRP54 subunit,
GTPase domain; SRP54,Signal recognition particle, ,CUFF.33101.1
(1485 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66087 homologue to UniRef100_A2Q2E1 Cluster: GTP-bind... 1296 0.0
gnl|LJGI|TC64324 similar to UniRef100_A2Q2E3 Cluster: Signal pep... 950 0.0
>gnl|LJGI|TC66087 homologue to UniRef100_A2Q2E1 Cluster: GTP-binding signal recognition
particle SRP54, G-domain; n=1; Medicago truncatula|Rep:
GTP-binding signal recognition particle SRP54, G-domain -
Medicago truncatula (Barrel medic), partial (69%)
Length = 1025
Score = 1296 bits (654), Expect = 0.0
Identities = 685/690 (99%), Gaps = 4/690 (0%)
Strand = Plus / Plus
Query: 1 atgcccggagtggtgagggctgagatgttcggacagttaaccactggccttgaagctgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atgcccggagtggtgagggctgagatgttcggacagttaaccactggccttgaagctgct 397
Query: 61 tggaacaagctcaaaggagaagaggttttgaccaaagagaatattgtggagcctatgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tggaacaagctcaaaggagaagaggttttgaccaaagagaatattgtggagcctatgaga 457
Query: 121 gatattaggagagcccttttagaagctgatgttagccttcctgttgtgagaaggtttgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gatattaggagagcccttttagaagctgatgttagccttcctgttgtgagaaggtttgtg 517
Query: 181 caatcggtcagcgatcaggctgtaggtgttggagtgattcgaggtgtgaaaccagatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 caatcggtcagcgatcaggctgtaggtgttggagtgattcgaggtgtgaaaccagatcag 577
Query: 241 caattggttaagattgtacatgaagaacttgtaaaattgatgggcggagaagtctctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caattggttaagattgtacatgaagaacttgtaaaattgatgggcggagaagtctctgaa 637
Query: 301 ctggcttttgcaaagtctgggaccactgtcatcttattggctggactccagggagttggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctggcttttgcaaagtctgggaccactgtcatcttattggctggactccagggagttggg 697
Query: 361 aagacaactgtttgtgctaagctgtcaaattatctaaagaaacaggggaagagttgcatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aagacaactgtttgtgctaagctgtcaaattatctaaagaaacaggggaagagttgcatg 757
Query: 421 ctagtcgctggggatatttacagaccggctgctattgaccagcttactattttgggtaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 758 ctagtcgctggggatatttacagaccggctgctattgaccagcttactattttgggcaaa 817
Query: 481 caggtgggtgtgcctgtctatacagcagggaccgatgttaaaccttcagaaattgctaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 caggtgggtgtgcctgtctatacagcagggaccgatgttaaaccttcagaaattgctaga 877
Query: 541 caaggtttagaagaggccaaaaagaagaaaattgatgtggttattgttgacactgctggt 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 caaggtttagaagaggcc-aaaagaagaaaattgatgtggttattgttgacactgctggt 936
Query: 601 aggctgcagatagacaaagctatgatggatgagttaaaagaagttaagaagtcattgaat 660
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 937 a-gctgcagatagacaaagctatgatggatgagtt-aaagaagttaagaagtcattg-at 993
Query: 661 ccaacagaagtcttgctagttgtggatgca 690
||||||||||||||||||||||||||||||
Sbjct: 994 ccaacagaagtcttgctagttgtggatgca 1023
>gnl|LJGI|TC64324 similar to UniRef100_A2Q2E3 Cluster: Signal peptide binding (SRP54)
M-domain; n=1; Medicago truncatula|Rep: Signal peptide
binding (SRP54) M-domain - Medicago truncatula (Barrel
medic), partial (74%)
Length = 888
Score = 950 bits (479), Expect = 0.0
Identities = 515/523 (98%), Gaps = 3/523 (0%)
Strand = Plus / Plus
Query: 963 agatgctgaaaaactgcaagagaagatcatgagtgcaaagtttgactttaacgattttct 1022
|||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||| ||
Sbjct: 13 agatgctgaaaa-ctgcaagagaagatcgtgagtgcatagtt-gactttaacgattt-ct 69
Query: 1023 aaagcaaactcgtgctgttgcacaaatgggttctgtgtctcgtgttatgggaatgattcc 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 aaagcaaactcgtgctgttgcacaaatgggttctgtgtctcgtgttatgggaatgattcc 129
Query: 1083 tggtatgtcgaaggttactcctgctcaaattcgagaagcagagaagaatttgaagaatat 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tggtatgtcgaaggttactcctgctcaaattcgagaagcagagaagaatttgaagaatat 189
Query: 1143 ggaagcaatgatagaagccatgaccccagaggagagggaaaaaccagaactgttggctga 1202
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 190 ggaagcaatgatagaagccatgaccccataggagagggaaaaaccggaactgttggctga 249
Query: 1203 atcccctgtcaggaggaaacgagttgctcaggaatcagggaaaacagagcagcaggtaag 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atcccctgtcaggaggaaacgagttgctcaggaatcagggaaaacagagcagcaggtaag 309
Query: 1263 ccaagttgtagctcaactattccaaatgcgtgttcgaatgaagaatctgatgggtgtaat 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ccaagttgtagctcaactattccaaatgcgtgttcgaatgaagaatctgatgggtgtaat 369
Query: 1323 gcaaggtggatcaatgccaacacttagtaatcttgaagaagcacttaaaccagaggaaaa 1382
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 370 gcaaggtggatcaatgccaacacttagtaatcttgaagaagtacttaaaccagaggaaaa 429
Query: 1383 ggctccacctggcactgcaaggaggagaaagagatcagaacaaaggagcctatttgcgga 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggctccacctggcactgcaaggaggagaaagagatcagaacaaaggagcctatttgcgga 489
Query: 1443 ctcagcagcaaggccaactcctcgtggttttgggagcaaataa 1485
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctcagcagcaaggccaactcctcgtggttttgggagcaaataa 532