Miyakogusa Predicted Gene
- Lj1g3v4717390.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4717390.1 tr|G7KQW4|G7KQW4_MEDTR RNA-binding protein
OS=Medicago truncatula GN=MTR_7g104800 PE=4
SV=1,78.99,0,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; RNA recognition motif,RNA recogni,CUFF.33094.1
(1491 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82005 similar to UniRef100_A7QFA8 Cluster: Chromosome... 1094 0.0
gnl|LJGI|GO020464 similar to UniRef100_A7QFA8 Cluster: Chromosom... 519 e-146
gnl|LJGI|AV417593 similar to UniRef100_A7QFA8 Cluster: Chromosom... 68 2e-10
>gnl|LJGI|TC82005 similar to UniRef100_A7QFA8 Cluster: Chromosome undetermined
scaffold_87, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_87, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(31%)
Length = 829
Score = 1094 bits (552), Expect = 0.0
Identities = 562/564 (99%), Gaps = 1/564 (0%)
Strand = Plus / Plus
Query: 928 aagctgtttgaacatcatggaaagatcacaaaagtggttctccctcctgctaaagctgga 987
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 aagctgtttgaacatcatggaaagatcacaaaagtggttctccctc-tgctaaagctgga 59
Query: 988 caagaaaagagcagatttggttttgtgcatttttctgataggtcaagtgccatgaaggca 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 caagaaaagagcagatttggttttgtgcatttttctgataggtcaagtgccatgaaggca 119
Query: 1048 ttgaagaatacagagaaatatgaaattgatggcaaaaatttggaatgttcacttgctaag 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ttgaagaatacagagaaatatgaaattgatggcaaaaatttggaatgttcacttgctaag 179
Query: 1108 ccgcaggctgaccaaaggtcgtccggcacatcaaattcacagaagccagtcgtacttccc 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ccgcaggctgaccaaaggtcgtccggcacatcaaattcacagaagccagtcgtacttccc 239
Query: 1168 acttatccacatcgtcttggttatggtatggttggaggtgcatatggtggcatcggtgca 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acttatccacatcgtcttggttatggtatggttggaggtgcatatggtggcatcggtgca 299
Query: 1228 ggatacggtgctgctggctttgcacaaccacttatgtatggtatgggagcaaaccctgct 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggatacggtgctgctggctttgcacaaccacttatgtatggtatgggagcaaaccctgct 359
Query: 1288 ggcatgccaatgatgccaatgcttctaccagatggaagaattggatatgtagtgcaacag 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggcatgccaatgatgccaatgcttctaccagatggaagaattggatatgtagtgcaacag 419
Query: 1348 ccaggtttgcaacagccaagtttgcaacagcatgctccttcaccagtatcccgacatggc 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ccaggtttgcaacagccaagtttgcaacagcatgctccttcaccagtatcccgacatggc 479
Query: 1408 aggaggagtggtggtggtagctcaagtggtgggaagcgcggcaatgacaataaccgtggg 1467
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aggaggagcggtggtggtagctcaagtggtgggaagcgcggcaatgacaataaccgtggg 539
Query: 1468 catcgccgatataatccctactaa 1491
||||||||||||||||||||||||
Sbjct: 540 catcgccgatataatccctactaa 563
>gnl|LJGI|GO020464 similar to UniRef100_A7QFA8 Cluster: Chromosome undetermined
scaffold_87, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_87, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (22%)
Length = 617
Score = 519 bits (262), Expect = e-146
Identities = 262/262 (100%)
Strand = Plus / Plus
Query: 288 tcatactaatgatgaggttgagaaaaagaaacatgctgagctacttgcacttccacctca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcatactaatgatgaggttgagaaaaagaaacatgctgagctacttgcacttccacctca 415
Query: 348 tggttcagaggtctacattgggggtattgctaacaatgtttctgaagaagatttgagagt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tggttcagaggtctacattgggggtattgctaacaatgtttctgaagaagatttgagagt 475
Query: 408 cttttgtcaatctgttggagaagtgtcagaggtaagaattatgaaggcgaaagaatccgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 cttttgtcaatctgttggagaagtgtcagaggtaagaattatgaaggcgaaagaatccgg 535
Query: 468 tgaaggaaaaggttatgcttttgtggccttcaagacaaaggaattggcctcccaggctat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgaaggaaaaggttatgcttttgtggccttcaagacaaaggaattggcctcccaggctat 595
Query: 528 tgaggaactgaacaactctgaa 549
||||||||||||||||||||||
Sbjct: 596 tgaggaactgaacaactctgaa 617
Score = 240 bits (121), Expect = 2e-62
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 6 taaaatgcctgggacaagacaaagagatgtaacagcccaaaatccagagtcaccagaggg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 taaaatgcctgggacaagacaaagagatgtaacagcccaaaatccagagtcaccagaggg 196
Query: 66 gaacagtgagcctgaaaaacccacagattctgatgagcaggtagactttgatggggacaa 125
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 197 gaacagtgagcctgaaaaacccacagattctgatgagcaggcagactttgatggggacaa 256
Query: 126 tgatc 130
|||||
Sbjct: 257 tgatc 261
>gnl|LJGI|AV417593 similar to UniRef100_A7QFA8 Cluster: Chromosome undetermined
scaffold_87, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_87, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(31%)
Length = 423
Score = 67.9 bits (34), Expect = 2e-10
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 927 gaagctgtttgaacatcatggaaagatcacaaaagtggttctccctcctgctaaagctgg 986
|||||| |||||||| ||||| ||||||||||| ||||||||||| || | || ||||
Sbjct: 307 gaagctttttgaacaccatgggaagatcacaaaggtggttctcccaccaccaaagtctgg 366
Query: 987 acaagaaaagagcagatttggttttgtgcatttt 1020
||| ||||||| ||| | |||||||||||||||
Sbjct: 367 acaggaaaagaatagaatcggttttgtgcatttt 400