Miyakogusa Predicted Gene
- Lj1g3v4703000.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj1g3v4703000.1 tr|B6DRE4|B6DRE4_9LAMI 60S acidic ribosomal
protein P2-like protein OS=Forsythia suspensa GN=RPLP2
P,73.04,2e-19,60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL;
seg,NULL; Ribosomal_60s,Ribosomal protein 60S,CUFF.32975.1
(348 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67692 similar to UniRef100_A7PPG7 Cluster: Chromosome... 690 0.0
gnl|LJGI|TC76600 similar to UniRef100_Q3HVP0 Cluster: 60s acidic... 129 1e-29
gnl|LJGI|TC70041 similar to UniRef100_Q3HVP0 Cluster: 60s acidic... 129 1e-29
gnl|LJGI|TC67850 similar to UniRef100_Q3HVP0 Cluster: 60s acidic... 129 1e-29
gnl|LJGI|BW604002 similar to UniRef100_Q8H2B9 Cluster: 60s acidi... 64 6e-10
>gnl|LJGI|TC67692 similar to UniRef100_A7PPG7 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), complete
Length = 606
Score = 690 bits (348), Expect = 0.0
Identities = 348/348 (100%)
Strand = Plus / Plus
Query: 1 atgaaggtgatcgcagcctacttgctcgccgtgttgggaggtaacacagccccttctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atgaaggtgatcgcagcctacttgctcgccgtgttgggaggtaacacagccccttctgcc 128
Query: 61 gacgacttgaagagcatccttagctccgttggagctgatgcggatgatgagaaactcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gacgacttgaagagcatccttagctccgttggagctgatgcggatgatgagaaactcagt 188
Query: 121 tttctcttgtctgaagtgaagggtaaggatctcgctgaggttattgcctccggtagggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tttctcttgtctgaagtgaagggtaaggatctcgctgaggttattgcctccggtagggag 248
Query: 181 aagttatcctcagttccttgcggtggtggtgttgccgttgctgtgtctgctgctccggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aagttatcctcagttccttgcggtggtggtgttgccgttgctgtgtctgctgctccggga 308
Query: 241 ggtggcggtggtggtgctgctccagctgcagctgaatcgaagaaagaggaaaaggtggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggtggcggtggtggtgctgctccagctgcagctgaatcgaagaaagaggaaaaggtggag 368
Query: 301 gagaaggaggaatcagatgatgacatgggtttcagtctctttgattag 348
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gagaaggaggaatcagatgatgacatgggtttcagtctctttgattag 416
>gnl|LJGI|TC76600 similar to UniRef100_Q3HVP0 Cluster: 60s acidic ribosomal
protein-like protein; n=1; Solanum tuberosum|Rep: 60s
acidic ribosomal protein-like protein - Solanum
tuberosum (Potato), complete
Length = 544
Score = 129 bits (65), Expect = 1e-29
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 227 ctgctgctccgggaggtggcggtggtggtgctgctccagctgcagctgaatcgaagaaag 286
|||| ||||| || ||||| ||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 307 ctgccgctcccggtggtggtggtggtgctgctgccccagcagctgctgaggcaaagaaag 366
Query: 287 aggaaaaggtggaggagaaggaggaatcagatgatgacatgggtttcagtctctttgatt 346
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 367 aggaaaaggtggaggagaaagaggaatctgatgatgatatgggtttcagtctctttgatt 426
Query: 347 a 347
|
Sbjct: 427 a 427
>gnl|LJGI|TC70041 similar to UniRef100_Q3HVP0 Cluster: 60s acidic ribosomal
protein-like protein; n=1; Solanum tuberosum|Rep: 60s
acidic ribosomal protein-like protein - Solanum
tuberosum (Potato), complete
Length = 638
Score = 129 bits (65), Expect = 1e-29
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 227 ctgctgctccgggaggtggcggtggtggtgctgctccagctgcagctgaatcgaagaaag 286
|||| ||||| || ||||| ||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 351 ctgccgctcccggtggtggtggtggtgctgctgccccagcagctgctgaggcaaagaaag 410
Query: 287 aggaaaaggtggaggagaaggaggaatcagatgatgacatgggtttcagtctctttgatt 346
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 411 aggaaaaggtggaggagaaagaggaatctgatgatgatatgggtttcagtctctttgatt 470
Query: 347 a 347
|
Sbjct: 471 a 471
>gnl|LJGI|TC67850 similar to UniRef100_Q3HVP0 Cluster: 60s acidic ribosomal
protein-like protein; n=1; Solanum tuberosum|Rep: 60s
acidic ribosomal protein-like protein - Solanum
tuberosum (Potato), complete
Length = 571
Score = 129 bits (65), Expect = 1e-29
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 227 ctgctgctccgggaggtggcggtggtggtgctgctccagctgcagctgaatcgaagaaag 286
|||| ||||| || ||||| ||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 271 ctgccgctcccggtggtggtggtggtgctgctgccccagcagctgctgaggcaaagaaag 330
Query: 287 aggaaaaggtggaggagaaggaggaatcagatgatgacatgggtttcagtctctttgatt 346
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 331 aggaaaaggtggaggagaaagaggaatctgatgatgatatgggtttcagtctctttgatt 390
Query: 347 a 347
|
Sbjct: 391 a 391
>gnl|LJGI|BW604002 similar to UniRef100_Q8H2B9 Cluster: 60s acidic ribosomal protein;
n=1; Prunus dulcis|Rep: 60s acidic ribosomal protein -
Prunus dulcis (Almond) (Prunus amygdalus), partial (87%)
Length = 483
Score = 63.9 bits (32), Expect = 6e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 227 ctgctgctccgggaggtggcggtggtggtgctgctccagctgcagctgaatcgaagaaag 286
|||| ||||| || ||||| ||||||| |||||| ||||| || ||||| | |||||||
Sbjct: 408 ctgccgctcccggtggtggtggtggtgctgctgccccagcagctgctgaggcaaagaaag 467
Query: 287 aggaaaaggtggagga 302
||||||||||||||||
Sbjct: 468 aggaaaaggtggagga 483